CF832066
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 3.566e-40 Identity = 81/149 (54.36%), Postives = 102/149 (68.46%), Query Frame = 1 Query: 16 VGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462 +GK A + GNVLP+ IP+G++VCNVE GD G +AR SG YA++ SH + D ++LPS +K++ + CRA IG VAG GR EKP +KAG Y+ R WP VRGVAMNPV HPHGGG+H+ G +TV R APPGQKVG I Sbjct: 83 IGKGAEVKTGNVLPLSEIPDGSLVCNVEIRPGDGGKIARRSGTYAIVFSH--EGDKVILRLPSRKEKLVDARCRATIGVVAGSGRIEKPFMKAGIKYYHERTHPKRWPVVRGVAMNPVSHPHGGGSHKRPGKPTTVARTAPPGQKVGHI 229
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 4.658e-40 Identity = 83/147 (56.46%), Postives = 99/147 (67.35%), Query Frame = 1 Query: 16 VGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 456 VG A + GN LP+ IPEG VCNVE + GD G ARASG A +++H D D V+LPSG K + CRA IG VAGGGRTEKP +KAGN YHK + + +P+VRGVAMN V+HP GGG QH G +V RDAPPG+KVG Sbjct: 83 VGVSAEIKPGNTLPLAEIPEGVPVCNVESNRGDGGKFARASGVSATLLTH--DRDVAVVQLPSGEVKRLDPQCRATIGVVAGGGRTEKPFVKAGNKYHKMKARGTKYPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 5.150e-39 Identity = 77/148 (52.03%), Postives = 97/148 (65.54%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462 G + GN+ +++IPEG VCN+E GD G RASG + ++S D V++PSG +K CRAMIG VAGGGRT+KP +KAG YHK + K WP+VRGVAMN V+HP GGG HQH+G TV R+APPG+KVG I Sbjct: 83 GDNVEIASGNITYLKNIPEGTPVCNIEAQPGDGGKFIRASGTFGFVVSREADK--VLVQMPSGKQKWFHPNCRAMIGVVAGGGRTDKPFVKAGKKYHKMKSKAAKWPRVRGVAMNAVDHPFGGGKHQHVGKPKTVSRNAPPGRKVGSI 228
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4) HSP 1 Score: 160.614 bits (405), Expect = 8.784e-39 Identity = 80/147 (54.42%), Postives = 97/147 (65.99%), Query Frame = 1 Query: 16 VGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 456 VG A + GN LP+ IPEG VCNVE GD G ARASG A +++H D + VKLPSG K + CRA IG VAGGGRT+KP +KAGN +HK + + WP VRGVAMN V+HP GGG QH G ++ R+APPG+KVG Sbjct: 83 VGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVG 227
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.147e-38 Identity = 78/147 (53.06%), Postives = 97/147 (65.99%), Query Frame = 1 Query: 16 VGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 456 +G A + GN +P+ IPEG VCNVE GD G ARASG A +++H D + V+LPSG + + CRA IG VAGGGRTEKP +KAGN +HK + + WP+VRGVAMN V+HP GGG QH G +V RD PPG+KVG Sbjct: 83 IGVSAEIAPGNTMPLAEIPEGVPVCNVERQPGDGGKFARASGVSATLLTH--DRNAAVVQLPSGEMRRLSPECRATIGVVAGGGRTEKPFVKAGNKHHKMKSRGGKWPRVRGVAMNAVDHPFGGGGRQHPGKPKSVSRDTPPGRKVG 227
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.147e-38 Identity = 80/148 (54.05%), Postives = 98/148 (66.22%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462 G A + GN LP+ SIPEG +CN+E G G ARASG Y ++++H D T V+LPSG K + C A IG VAGGGRTEKPL+KAG +++K+R K WP+VRGVAMN V+HP GGG QH G TV R PPG+KVG I Sbjct: 83 GPAAEIQPGNTLPLASIPEGMPICNIESKPGHGGQFARASGVYGILVAH--DVGATVVQLPSGEMKWLNPNCLATIGVVAGGGRTEKPLVKAGKSFYKYRSKAVKWPRVRGVAMNAVDHPFGGGGRQHPGRPKTVSRGTPPGRKVGSI 228
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.147e-38 Identity = 82/148 (55.41%), Postives = 96/148 (64.86%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462 G A + GNVLP+ IPEG V N+E GD G L R+ G YA +ISH D T VKLPSG K++ CRA +G VAGGGR EKP +KAG YH K WPKVRGVAMN V+HP+GGG HQH+G S+V R PG+KVG I Sbjct: 87 GISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.147e-38 Identity = 80/149 (53.69%), Postives = 103/149 (69.13%), Query Frame = 1 Query: 16 VGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462 +G A + GN+LP+ +IPEG + NVE GD G LAR+ G YA+++ + ++ ++LPSG K + + RA IG AG GR EKPLLKAGNAY+K++ K WP VRGVAMN V HPHGGGNHQ G+ +TV R+APPGQKVG I Sbjct: 86 IGPNAAPVNGNILPLYAIPEGTQIFNVEIRPGDGGKLARSGGAYAILVGKS--GNSAIIQLPSGKVKQVNAKARATIGIAAGAGRDEKPLLKAGNAYYKWKAKAKKWPVVRGVAMNAVNHPHGGGNHQSPGYPTTVARNAPPGQKVGHI 232
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.498e-38 Identity = 82/148 (55.41%), Postives = 96/148 (64.86%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462 G A + GNVLP+ IPEG V N+E GD G L R+ G YA +ISH D T V+LPSG K++ CRA +G VAGGGR EKP +KAG YH K WPKVRGVAMN V+HP+GGG HQHIG S+V R PG+KVG I Sbjct: 87 GISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHIGKPSSVSRHTSPGRKVGHI 232
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.338e-38 Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462 G A + GN LP+ IPEG +CN+E GD G AR+SG YA+I++H + T V++PSG K + CRA IG VAGGGRTEKP ++AGN ++K K WP VRGVAMN V+HP GGG QH G TV R+ PPG+KVG I Sbjct: 84 GISAEIKPGNTLPLSEIPEGCAICNIESQPGDGGAFARSSGVYAIIVAH--EGKKTVVQMPSGEIKRLNPKCRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQHPGRPKTVSRNTPPGRKVGSI 229 The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bpback to top |