CF832066

Overview
NameCF832066
Unique NameCF832066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:325..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.338e-38
Identity = 81/148 (54.73%), Postives = 97/148 (65.54%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            G  A +  GNVLP+  IPEG  V N+E   GD G L RA G YA +++H  D   T VKLPSG  K++   CRA IG VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R+  PG+KVG I
Sbjct:   87 GISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHI 232          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METVA (50S ribosomal protein L2P OS=Methanococcus vannielii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.338e-38
Identity = 81/148 (54.73%), Postives = 97/148 (65.54%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            G  A +  GNVLP+  IPEG  V N+E   GD G L RA G YA +++H  D   T VKLPSG  K++   CRA IG VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R+  PG+KVG I
Sbjct:   87 GISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHI 232          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.360e-38
Identity = 81/149 (54.36%), Postives = 99/149 (66.44%), Query Frame = 1
Query:   16 VGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            +G  A    GN+LP+  IPEG  V NVE   GD G LAR +G YA+++        T ++LPSG  K +P+  RA IG  AG GR EKP++KAG AYHK++VK   WP+VRGVAMN V+HP GGG HQH G  STV R APPG+KVG I
Sbjct:   82 IGPAAKPEAGNILPLGKIPEGTEVFNVELRPGDGGKLARQAGSYALVVGRA--GAKTILRLPSGKDKEVPNDSRATIGIPAGAGRIEKPIMKAGFAYHKWKVKARKWPRVRGVAMNAVDHPFGGGRHQHKGRPSTVARTAPPGRKVGHI 228          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.694e-38
Identity = 80/148 (54.05%), Postives = 96/148 (64.86%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            G  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:   87 GISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.694e-38
Identity = 80/148 (54.05%), Postives = 96/148 (64.86%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            G  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:   87 GISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.694e-38
Identity = 81/149 (54.36%), Postives = 101/149 (67.79%), Query Frame = 1
Query:   16 VGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            +G  A  + GN+LPV  IPEG  V N+E   GD G L RA G YA+I+  +   + T ++LPSG  K +P+  RA IG VAG GR EKPLLKAG AY+K+  K + WP+VRGVAMN V HPHGGG+HQ     +TV R+APPG+KVG I
Sbjct:   82 IGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS--GNKTIIQLPSGKVKEVPNDARATIGIVAGAGRLEKPLLKAGAAYYKWSAKPHVWPRVRGVAMNAVNHPHGGGSHQSPSFPTTVSRNAPPGRKVGHI 228          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 7.436e-38
Identity = 83/149 (55.70%), Postives = 99/149 (66.44%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 462
            G  A +  GN+LP+ +IPEG  V N+E   GD G L RA G YA I++H  D + T VKLPSG  K + S CRA IG VAGGGR EKP +KAG  YH  + K   WP+VRGVAMN V+HP GGG HQH G  +TV R+  PPG+KVG I
Sbjct:   87 GVSAEIKPGNILPLGAIPEGIPVFNIETVPGDGGKLVRAGGCYAHILTH--DGERTYVKLPSGHIKALHSMCRATIGVVAGGGRKEKPFVKAGKKYHAMKAKAVKWPRVRGVAMNAVDHPFGGGRHQHTGKPTTVSRKKVPPGRKVGHI 233          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METTH (50S ribosomal protein L2P OS=Methanobacterium thermoautotrophicum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.712e-38
Identity = 81/148 (54.73%), Postives = 96/148 (64.86%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            G KA +  GN LP+  IPEG  + N+E+  GD G L R+SG YA +I+H  D D   ++LPSG  K +   CRA +G VAGGGR EKP LKAG  YH  R K      VRGVAMN V+HPHGGGN QH G  +TV R APPG+KVG I
Sbjct:   87 GVKARVKPGNSLPLSEIPEGTPIYNIENRPGDGGKLVRSSGTYASLITH--DADKAVIELPSGELKALNPQCRATVGVVAGGGRREKPFLKAGKKYHALRAKGKKSVTVRGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSI 232          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SULIY (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.268e-37
Identity = 78/148 (52.70%), Postives = 99/148 (66.89%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:   82 GKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.268e-37
Identity = 78/148 (52.70%), Postives = 99/148 (66.89%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:   82 GKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METVS3.338e-3854.7350S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_METVA3.338e-3854.7350S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_AERPE4.360e-3854.3650S ribosomal protein L2P OS=Aeropyrum pernix GN=r... [more]
RL2_METM75.694e-3854.0550S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM65.694e-3854.0550S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_HYPBU5.694e-3854.3650S ribosomal protein L2P OS=Hyperthermus butylicu... [more]
RL2_METJA7.436e-3855.7050S ribosomal protein L2P OS=Methanocaldococcus ja... [more]
RL2_METTH9.712e-3854.7350S ribosomal protein L2P OS=Methanobacterium ther... [more]
RL2_SULIY1.268e-3752.7050S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIN1.268e-3752.7050S ribosomal protein L2P OS=Sulfolobus islandicus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01E04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bp
GTCAGTTCGTGCACTGTCGGCAAGAAAGCCACTCTGATGGTTGGTAATGT
GTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGC
ATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCC
GTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCC
ATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGC
AGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAAT
GCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGG
TGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGC
ACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAG
GTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGC
TGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAA
ATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTA
CCTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTA
AATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTA
GTTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCAAATTAA
GTAAATGGAAATGTTGTTTTTATCTGAAAAA
back to top