CF832066

Overview
NameCF832066
Unique NameCF832066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_CHLAT (50S ribosomal protein L2, chloroplastic OS=Chlorokybus atmophyticus GN=rpl2 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16
Identity = 51/128 (39.84%), Postives = 67/128 (52.34%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G  A L +GN LP+  IP G  + N+E   G  G L RA+G  A +++   +     V+LPSG  +++   C A IGQV     +   + KAG         R  W    PKVRGV MNPV+HPHGGG
Sbjct:  119 GPDAPLQLGNALPLSKIPLGTGIHNIEVSPGQGGKLVRAAGGVAQLVAK--EGSYVTVRLPSGEVRLVLKECSATIGQVGNVDASNVTIGKAG---------RKRWLGQRPKVRGVVMNPVDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_THENN (50S ribosomal protein L2 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHAST 420
            G  A +  GN LP+  IP G +V NVE   G  G +ARA+G Y  I++   + D   +++PSG  + +   C A +G V       +   KAG    ++  +R   P VRGVAMNPV+HPHGGG  +  GH  T
Sbjct:  120 GSDAEIKPGNALPLEKIPVGTLVHNVEFTPGKGGQIARAAGTYCQIMAK--EGDYALLRMPSGELRKVHIKCYATVGVVGNEDHKNEVHGKAGRV--RWLGRR---PHVRGVAMNPVDHPHGGGEGRGKGHHPT 246          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SYMTH (50S ribosomal protein L2 OS=Symbiobacterium thermophilum GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 51/125 (40.80%), Postives = 70/125 (56.00%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH-KFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            G  A + VGN LP+ +IP G +V N+E + G  G L R++G  A I++   +     ++LPSG ++ +   CRA +GQV         + KAG   H  FR      P VRGV MNPV+HPHGGG
Sbjct:  120 GPDADIKVGNALPLENIPVGTIVHNIELYPGRGGQLVRSAGASAQIMA--KEGRYALLRLPSGEQRKVLLACRATVGQVGNLEHENIVIGKAGRKRHLGFR------PAVRGVVMNPVDHPHGGG 236          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SHEPW (50S ribosomal protein L2 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +I+   D     ++L SG  + +P  CRA +G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  119 GIDAEIKSGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAGA-----KRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SHEHH (50S ribosomal protein L2 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +I+   D     ++L SG  + +P  CRA +G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  119 GIDAEIKSGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAGA-----KRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SHEB9 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS195) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  119 GVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SHEB8 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS185) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  119 GVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SHEB5 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  119 GVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SHEB2 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS223) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  119 GVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_PSEHT (50S ribosomal protein L2 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN LP+R++P G+ V NVE   G    +AR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG N +   R      P VRGVAMNPV+HPHGGG  +  G
Sbjct:  119 GVDAPIKPGNALPMRNMPVGSTVHNVELKPGKGAQIARSAGAYVQILAR--DGQYVTLRLRSGEVRKVEADCRATLGEVGNAEHMLRSLGKAGANRWRGIR------PTVRGVAMNPVDHPHGGGEGRTSG 241          
The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_CHLAT4.690e-1639.8450S ribosomal protein L2, chloroplastic OS=Chlorok... [more]
RL2_THENN6.126e-1638.8150S ribosomal protein L2 OS=Thermotoga neapolitana... [more]
RL2_SYMTH6.126e-1640.8050S ribosomal protein L2 OS=Symbiobacterium thermo... [more]
RL2_SHEPW6.126e-1639.2350S ribosomal protein L2 OS=Shewanella piezotolera... [more]
RL2_SHEHH6.126e-1639.2350S ribosomal protein L2 OS=Shewanella halifaxensi... [more]
RL2_SHEB96.126e-1638.4650S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB86.126e-1638.4650S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB56.126e-1638.4650S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB26.126e-1638.4650S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_PSEHT6.126e-1638.9350S ribosomal protein L2 OS=Pseudoalteromonas halo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bp
GTCAGTTCGTGCACTGTCGGCAAGAAAGCCACTCTGATGGTTGGTAATGT
GTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGC
ATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCC
GTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCC
ATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGC
AGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAAT
GCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGG
TGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGC
ACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAG
GTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGC
TGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAA
ATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTA
CCTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTA
AATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTA
GTTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCAAATTAA
GTAAATGGAAATGTTGTTTTTATCTGAAAAA
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