CF832066

Overview
NameCF832066
Unique NameCF832066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_NITWN (50S ribosomal protein L2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 48/130 (36.92%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G    +  GNV+P+ ++P G +V NVE  +G  G LAR++G YA I+    D D   ++L SG ++++   CR  IG V+        + KAG      R   N     RGV MNP++HPHGGG  +  G
Sbjct:  119 GNYVDVKPGNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGR--DQDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSVGKAGRTRWMGRRPHN-----RGVVMNPIDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_MYCH7 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 7448) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 57/145 (39.31%), Postives = 74/145 (51.03%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 450
            G K+ ++VGN LP+  IPEG  V N+E   G    L R++G +A I   + D     +KL SG  + I + CRA IG V     +   + KAG   HK        P VRG  MNP +HPHGGG   Q IG  S +    P G+K
Sbjct:  120 GPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDEDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK-----GIRPTVRGSVMNPNDHPHGGGEGKQPIGRKSPL---TPWGKK 256          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_MYCH2 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 232) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 57/145 (39.31%), Postives = 74/145 (51.03%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 450
            G K+ ++VGN LP+  IPEG  V N+E   G    L R++G +A I   + D     +KL SG  + I + CRA IG V     +   + KAG   HK        P VRG  MNP +HPHGGG   Q IG  S +    P G+K
Sbjct:  120 GPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDEDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK-----GIRPTVRGSVMNPNDHPHGGGEGKQPIGRKSPL---TPWGKK 256          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METS4 (50S ribosomal protein L2 OS=Methylobacterium sp. (strain 4-46) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 408
            G++  +  GN +P+ ++P G +V NVE  +G  G LAR++G+YA I+    D     ++L SG ++++   C A +G V+        L KAG         R  W    P  RGVAMNP++HPHGGG  +  G
Sbjct:  120 GEQVDIKPGNAMPIGNMPVGTIVHNVELKIGKGGALARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCYATVGAVSNPDHMNISLGKAG---------RKRWLGRRPHNRGVAMNPIDHPHGGGEGRTSG 242          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METPB (50S ribosomal protein L2 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 51/139 (36.69%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 423
            G+   +  GN  P+ S+P G +V NVE  +G  G +AR++G+YA I+    D     ++L SG ++++   C A +G V+        L KAG         RN W    P  RGVAMNPV+HPHGGG  +  G  + V
Sbjct:  120 GESVDVKPGNAGPIGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCFASVGAVSNPDHMNISLGKAG---------RNRWLGKRPHNRGVAMNPVDHPHGGGEGRTSGGRNPV 247          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METI4 (50S ribosomal protein L2 OS=Methylacidiphilum infernorum (isolate V4) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 55/144 (38.19%), Postives = 79/144 (54.86%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW-PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQ 447
            G  A   VGN LP+++IP G  + N+E   G  G L R++G  A ++    D +   VKLPSG  + + + C A +GQV+      K L KAG      R +   W P+VRGVAMNPV+HP+GGG  +  G     + ++P G+
Sbjct:  119 GPDAPPEVGNSLPLKNIPSGLPIYNIELVPGKGGQLVRSAGSSARMMGL--DKEYAIVKLPSGEIRKVCAECYATVGQVSNPDHFNKSLGKAG------RTRWLGWRPRVRGVAMNPVDHPNGGGQGKSKGGGGWQQLESPWGK 254          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_FRATO (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  120 GEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGK--DNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_FRATH (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  120 GEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGK--DNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_FRATF (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  120 GEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGK--DNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_FRAP2 (50S ribosomal protein L2 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 51/134 (38.06%), Postives = 73/134 (54.48%), Query Frame = 1
Query:    7 SCTVGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            S   G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 SVVSGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGK--DNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_NITWN6.126e-1636.9250S ribosomal protein L2 OS=Nitrobacter winogradsk... [more]
RL2_MYCH76.126e-1639.3150S ribosomal protein L2 OS=Mycoplasma hyopneumoni... [more]
RL2_MYCH26.126e-1639.3150S ribosomal protein L2 OS=Mycoplasma hyopneumoni... [more]
RL2_METS46.126e-1635.8250S ribosomal protein L2 OS=Methylobacterium sp. (... [more]
RL2_METPB6.126e-1636.6950S ribosomal protein L2 OS=Methylobacterium popul... [more]
RL2_METI46.126e-1638.1950S ribosomal protein L2 OS=Methylacidiphilum infe... [more]
RL2_FRATO6.126e-1638.4650S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATH6.126e-1638.4650S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATF6.126e-1638.4650S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRAP26.126e-1638.0650S ribosomal protein L2 OS=Francisella philomirag... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bp
GTCAGTTCGTGCACTGTCGGCAAGAAAGCCACTCTGATGGTTGGTAATGT
GTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGC
ATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCC
GTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCC
ATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGC
AGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAAT
GCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGG
TGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGC
ACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAG
GTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGC
TGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAA
ATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTA
CCTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTA
AATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTA
GTTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCAAATTAA
GTAAATGGAAATGTTGTTTTTATCTGAAAAA
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