CF832066

Overview
NameCF832066
Unique NameCF832066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_BACC2 (50S ribosomal protein L2 OS=Bacillus cereus (strain G9842) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 52/128 (40.62%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA IGQV   G  +  L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  119 GPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRASIGQV---GNEQHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_ALCBS (50S ribosomal protein L2 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G+ A + +GN LP+R+IP G+ + NVE   G  G +AR++G    +++   D     ++L SG  + + + C+A IG+V+    + + L KAG      +  R   P VRG AMNPV+HPHGGG  +  G
Sbjct:  119 GEDAPIKLGNALPLRNIPLGSTIHNVEMKPGKGGQIARSAGTSVQLLA--KDGQYVTLRLRSGEMRKVHADCKATIGEVSNSEHSLRSLGKAG-----AKRWRGVRPTVRGAAMNPVDHPHGGGEGRSSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_AERS4 (50S ribosomal protein L2 OS=Aeromonas salmonicida (strain A449) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 56/145 (38.62%), Postives = 81/145 (55.86%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 450
            G  A + VGN LP+R+IP G+ V  VE   G    LAR++G +  I++   +  T R++  SG  + + + CRA IG+V       + L KAG N +   R      P VRG+AMNPV+HPHGGG  ++ G    ++  +P GQK
Sbjct:  119 GADAAIKVGNTLPMRNIPVGSTVHAVEMKPGKGAQLARSAGTFIQILAREGNYVTLRLR--SGEVRKVLAECRATIGEVGNSEHMLRQLGKAGANRWRGIR------PTVRGMAMNPVDHPHGGGEGRNKG----MQPVSPWGQK 251          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_AERHH (50S ribosomal protein L2 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 56/145 (38.62%), Postives = 81/145 (55.86%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 450
            G  A + VGN LP+R+IP G+ V  VE   G    LAR++G +  I++   +  T R++  SG  + + + CRA IG+V       + L KAG N +   R      P VRG+AMNPV+HPHGGG  ++ G    ++  +P GQK
Sbjct:  119 GADAAIKVGNTLPMRNIPVGSTVHAVEMKPGKGAQLARSAGTFIQILAREGNYVTLRLR--SGEVRKVLAECRATIGEVGNSEHMLRQLGKAGANRWRGIR------PTVRGMAMNPVDHPHGGGEGRNKG----MQPVSPWGQK 251          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RM02_RECAM (60S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 50/135 (37.04%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 423
            G    + +GN LP+R+IP G ++ N+E + G  G + R++G  A +IS + +N    +KLPSG  ++ P+   A IG ++        + KAG +  ++  +R   P VRGVAMNPV+HPHGGG  +  G   +V
Sbjct:  119 GNDIDIRIGNTLPLRNIPIGTMIHNIELNPGKGGKIVRSAGSSAQLISKD-ENGFCMLKLPSGEYRLFPNNSLATIGILSNIDNKNIKIGKAGRS--RWMGRR---PIVRGVAMNPVDHPHGGGEGKTSGGRPSV 247          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 51/129 (39.53%), Postives = 72/129 (55.81%), Query Frame = 1
Query:    4 SSCTVGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            S+   G +A   +GN +P+  IP G VV NVE + G  G + RA+G  A +++   +     +KLPSG  ++I   C A IGQ+         L KAG +  ++  +R   PKVRG  MNPV+HPHGGG
Sbjct:  120 STIMAGPEAPFEIGNAMPLERIPLGTVVHNVELYPGRGGQMVRAAGAGAQVVAR--EGKYVSLKLPSGEVRMIRGECYATIGQLGNVDHNNISLGKAGRS--RWLGRR---PKVRGSVMNPVDHPHGGG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_POLSJ (50S ribosomal protein L2 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHPHGGG 390
            G +A + VGN LP+R+IP G+ +  +E  +G    +AR++G  A +++   +    +V++ SG  + I   CRA IG+VA    + + L KAG       VKR     P VRGV MNPV+HPHGGG
Sbjct:  119 GSEAPIRVGNTLPIRNIPVGSTIHCIEMQIGKGAQIARSAGTSATLLAR--EGTYAQVRMRSGEVRKIHIECRATIGEVANEEHSLRRLGKAG-------VKRWMGIRPTVRGVVMNPVDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_POLNA (50S ribosomal protein L2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHPHGGG 390
            G +A + VGN LP+R+IP G+ +  +E  +G    +AR++G  A +++   +    +V++ SG  + I   CRA IG+VA    + + L KAG       VKR     P VRGV MNPV+HPHGGG
Sbjct:  119 GSEAPIRVGNTLPIRNIPVGSTIHCIEMQIGKGAQIARSAGTSATLLAR--EGTYAQVRMRSGEVRKIHIECRATIGEVANEEHSLRRLGKAG-------VKRWMGIRPTVRGVVMNPVDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_OCEIH (50S ribosomal protein L2 OS=Oceanobacillus iheyensis GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G+ A + +GN LP+ SIP G V+ N+E   G  G +AR++G  A I+    +   T V+L SG  ++I + CRA IGQV   G  E  L++ G A       R+ W    P VRG  MNP +HPHGGG
Sbjct:  119 GENADIKLGNALPLGSIPVGTVIHNIELKPGRGGQIARSAGAEAQILGR--EEKYTLVRLSSGEVRLILTTCRATIGQV---GNIEHELVRVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_FRATW (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  120 GEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGK--DNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BACC26.126e-1640.6350S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_ALCBS6.126e-1636.9250S ribosomal protein L2 OS=Alcanivorax borkumensi... [more]
RL2_AERS46.126e-1638.6250S ribosomal protein L2 OS=Aeromonas salmonicida ... [more]
RL2_AERHH6.126e-1638.6250S ribosomal protein L2 OS=Aeromonas hydrophila s... [more]
RM02_RECAM8.000e-1637.0460S ribosomal protein L2, mitochondrial OS=Reclino... [more]
RL2_SYNJB8.000e-1639.5350S ribosomal protein L2 OS=Synechococcus sp. GN=r... [more]
RL2_POLSJ8.000e-1639.6850S ribosomal protein L2 OS=Polaromonas sp. (strai... [more]
RL2_POLNA8.000e-1639.6850S ribosomal protein L2 OS=Polaromonas naphthalen... [more]
RL2_OCEIH8.000e-1641.4150S ribosomal protein L2 OS=Oceanobacillus iheyens... [more]
RL2_FRATW8.000e-1638.4650S ribosomal protein L2 OS=Francisella tularensis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bp
GTCAGTTCGTGCACTGTCGGCAAGAAAGCCACTCTGATGGTTGGTAATGT
GTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGC
ATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCC
GTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCC
ATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGC
AGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAAT
GCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGG
TGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGC
ACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAG
GTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGC
TGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAA
ATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTA
CCTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTA
AATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTA
GTTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCAAATTAA
GTAAATGGAAATGTTGTTTTTATCTGAAAAA
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