CF832066

Overview
NameCF832066
Unique NameCF832066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_FRATT (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  120 GEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGK--DNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_FRATN (50S ribosomal protein L2 OS=Francisella tularensis subsp. novicida (strain U112) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  120 GEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGK--DNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_FRATM (50S ribosomal protein L2 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  120 GEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGK--DNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_FRAT1 (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  120 GEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGK--DNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_DESAA (50S ribosomal protein L2 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G +A +  GN LP+ +IP G  + N+E  VG  G + R +G +A +++   +    +V+LPSG  +++   C A IGQV   G  E   L  G A  K  + R   P VRGVAMNPV+HP GGG  +  G
Sbjct:  119 GPEADIKPGNALPLNNIPLGTQIHNIELKVGKGGQVVRGAGTFAQLVA--KEGKYAQVRLPSGEVRLVLLKCMATIGQV---GNVEHENLALGKAGRKRWLGRR--PSVRGVAMNPVDHPMGGGEGRSSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_CLOPH (50S ribosomal protein L2 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            G  A + VGN LP+ +IP G+ + N+E + G  G L R++G+ A +++      T R  LPSG  +++P  CRA +GQV         L KAG   H         P VRG  MNP +HPHGGG
Sbjct:  119 GATAEIKVGNCLPLANIPVGSQIHNIELYPGKGGQLVRSAGNSAQLMAREGKYATLR--LPSGEMRMVPISCRATLGQVGNIDHELVTLGKAGRVRH-----MGIRPTVRGSVMNPNDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_CLOBK (50S ribosomal protein L2 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 52/134 (38.81%), Postives = 73/134 (54.48%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 417
            G ++ + VGN LP+R+IP G V+ N+E   G    L R++G+ A +++   + D ++V+LPSG  + I   CRA IG V+        + KAG   H         P VRG  MNP +HPHGGG     IGH S
Sbjct:  119 GPESDIKVGNCLPIRNIPVGTVIHNIELAPGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTNEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_CHLSY (50S ribosomal protein L2 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            G  A + VGN LP+ +IP G  + N+E  +G  GVL R++G  A +++   + D   V++PSG  ++I   C A IGQV         L KAG +  ++  +R   P+VRG AMNP +HPHGGG
Sbjct:  119 GPDAEIRVGNALPLSAIPLGTQIHNIELEIGRGGVLVRSAGTAAQLMA--KEGDYAIVRMPSGEMRMIHLRCMATIGQVGNVDHQNIRLGKAGRS--RWLGRR---PRVRGAAMNPRDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_CHLAA (50S ribosomal protein L2 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            G  A + VGN LP+ +IP G  + N+E  +G  GVL R++G  A +++   + D   V++PSG  ++I   C A IGQV         L KAG +  ++  +R   P+VRG AMNP +HPHGGG
Sbjct:  119 GPDAEIRVGNALPLSAIPLGTQIHNIELEIGRGGVLVRSAGTAAQLMA--KEGDYAIVRMPSGEMRMIHLRCMATIGQVGNVDHQNIRLGKAGRS--RWLGRR---PRVRGAAMNPRDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_BART1 (50S ribosomal protein L2 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    7 SCTVGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            S   G    +  GN +P+ ++P G ++ NVE   G  G +AR++G YA ++    D+    ++L SG ++++ S C A +G V+          KAG +  ++R KR   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  115 SVVAGSNVDVKPGNAMPLGNMPVGTIIHNVEMKPGKGGQIARSAGAYAQLVGR--DHGMAILRLNSGEQRLVSSSCFATVGAVSNPDHGNINDGKAGRS--RWRGKR---PHVRGVAMNPVDHPHGGGEGRTSG 241          
The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_FRATT8.000e-1638.4650S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATN8.000e-1638.4650S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATM8.000e-1638.4650S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRAT18.000e-1638.4650S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_DESAA8.000e-1639.2350S ribosomal protein L2 OS=Desulfatibacillum alke... [more]
RL2_CLOPH8.000e-1639.5250S ribosomal protein L2 OS=Clostridium phytoferme... [more]
RL2_CLOBK8.000e-1638.8150S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CHLSY8.000e-1640.3250S ribosomal protein L2 OS=Chloroflexus aurantiac... [more]
RL2_CHLAA8.000e-1640.3250S ribosomal protein L2 OS=Chloroflexus aurantiac... [more]
RL2_BART18.000e-1636.5750S ribosomal protein L2 OS=Bartonella tribocorum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bp
GTCAGTTCGTGCACTGTCGGCAAGAAAGCCACTCTGATGGTTGGTAATGT
GTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGC
ATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCC
GTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCC
ATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGC
AGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAAT
GCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGG
TGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGC
ACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAG
GTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGC
TGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAA
ATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTA
CCTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTA
AATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTA
GTTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCAAATTAA
GTAAATGGAAATGTTGTTTTTATCTGAAAAA
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