CF832066
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_OLTVI (50S ribosomal protein L2, chloroplastic OS=Oltmannsiellopsis viridis GN=rpl2 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15 Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 1 Query: 4 SSCTVGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390 SS A ++ GN LP+++IP G V NVE G G LARA+G A I++ + + ++LPSG +++ + C A +GQV G T+ + G A K + + P VRGV MNP +HPHGGG Sbjct: 114 SSIISSLNAPVLTGNALPLKNIPLGGEVHNVELQPGAGGQLARAAGAVAQIVA--KEGNLVTLRLPSGEVRLVSNECWATVGQV---GNTDAINMVVGKAGRKRWLGKR--PHVRGVVMNPCDHPHGGG 235
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_ANGEV (50S ribosomal protein L2, chloroplastic OS=Angiopteris evecta GN=rpl2 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15 Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390 G +A + GN LP+ +P G + NVE G G LARA+G A +I+ + ++ PSG ++I C A +GQ+ K KAG+ ++ KR PKVRGV MNPV+HPHGGG Sbjct: 119 GSEAPISRGNALPLSKMPLGTTIHNVEITPGKGGQLARAAGAVAKLIAK--EGRLATLRSPSGEVRLISQDCLATVGQIGNADINNKNFGKAGSK--RWLGKR---PKVRGVVMNPVDHPHGGG 235
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_XANP2 (50S ribosomal protein L2 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15 Identity = 52/139 (37.41%), Postives = 72/139 (51.80%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 423 G++ + GN P+ S+P G +V NVE VG G +AR++G YA I+ D V+L SG ++++ C A +G V+ L KAG RN W P RGV MNPV+HPHGGG + G + V Sbjct: 119 GEQVDVKPGNAGPLSSLPVGTIVHNVELKVGKGGQIARSAGTYAQIVGR--DQGYVIVRLNSGEQRLVLGACYATVGAVSNPDHMNISLGKAG---------RNRWLGRKPHNRGVTMNPVDHPHGGGEGRTSGGRNPV 246
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_THISH (50S ribosomal protein L2 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15 Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 408 G A + GN LP+R+IP G VV +E G +AR++G +++ + T R++ SG + +P+ CRA IG+V+ + + KAG KR W P VRG AMNPV+HPHGGG ++ G Sbjct: 119 GTNAPIRAGNTLPLRNIPVGTVVHCIEMKPGKGAQMARSAGAAVQLVAREGQHATLRLR--SGEMRKVPADCRATIGEVSNSEHSLRKFGKAG-------AKR--WLGIRPTVRGTAMNPVDHPHGGGEGRNFG 241
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_THEM4 (50S ribosomal protein L2 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15 Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 411 G A + GN LP+ +IP G V+ NVE+ G G +AR++G +++ + +++PSG + +P C A IG V + KAG K R P VRGVAMNPV+HPHGGG + GH Sbjct: 119 GPDAEIKPGNALPLENIPVGTVIHNVEYIPGKGGQIARSAGTSCQLMAK--EGKYALLRMPSGELRKVPVKCYATIGVVGNEDHKNEVDGKAGRVRWKGRK-----PHVRGVAMNPVDHPHGGGEGRGKGH 242
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SYNP2 (50S ribosomal protein L2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15 Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390 G++A +GN LP+ IP G + N+E + G G + R++G +A +++ + D +KLPS +++ C A IG+V L KAG H R P+VRG MNPV+HPHGGG Sbjct: 119 GEEAPYEIGNALPLYKIPLGTEIHNIELYAGRGGQMVRSAGAFAQLVA--KEGDYVTIKLPSKEVRMVRKECYATIGKVGNAEARNLKLGKAGRTRHLGR-----RPQVRGSVMNPVDHPHGGG 235
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_PSEA6 (50S ribosomal protein L2 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rplB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15 Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408 G A + GN LP+R+IP G V +E G +AR++G YA I++ T R++ SG + + + CRA IG++ + L KAG N + R P VRGVAMNPV+HPHGGG + G Sbjct: 119 GSDAAIKAGNSLPMRNIPVGTTVHAIEMKPGKGAQIARSAGQYAQILARAEGYVTLRLR--SGEVRRVLADCRATIGEIGNAEHMLRSLGKAGANRWRGIR------PTVRGVAMNPVDHPHGGGEGRTSG 241
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_ORITI (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15 Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1 Query: 25 KATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408 KA + VGN LP+ IP G ++ N+E G G +AR++G YAV++ N D+ ++K SG + I RA +G V+ KAG ++ +R P VRGVAMNPV+HPHGGG + G Sbjct: 121 KAEINVGNCLPLEVIPVGTIIHNIEIKPGKGGQVARSAGTYAVLL--NKDSGYAQIKFRSGEVRRISLASRATVGSVSNIDHKNISYGKAGRV--RWLGRR---PVVRGVAMNPVDHPHGGGEGKTSG 241
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_NEIMB (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup B GN=rplB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15 Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390 G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG N + R P VRGV MNPV+HPHGGG Sbjct: 119 GAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_NEIG2 (50S ribosomal protein L2 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rplB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15 Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390 G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG N + R P VRGV MNPV+HPHGGG Sbjct: 119 GAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235 The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bpback to top |