CF832066

Overview
NameCF832066
Unique NameCF832066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_OLTVI (50S ribosomal protein L2, chloroplastic OS=Oltmannsiellopsis viridis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 1
Query:    4 SSCTVGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            SS      A ++ GN LP+++IP G  V NVE   G  G LARA+G  A I++   + +   ++LPSG  +++ + C A +GQV   G T+   +  G A  K  + +   P VRGV MNP +HPHGGG
Sbjct:  114 SSIISSLNAPVLTGNALPLKNIPLGGEVHNVELQPGAGGQLARAAGAVAQIVA--KEGNLVTLRLPSGEVRLVSNECWATVGQV---GNTDAINMVVGKAGRKRWLGKR--PHVRGVVMNPCDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_ANGEV (50S ribosomal protein L2, chloroplastic OS=Angiopteris evecta GN=rpl2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15
Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            G +A +  GN LP+  +P G  + NVE   G  G LARA+G  A +I+   +     ++ PSG  ++I   C A +GQ+       K   KAG+   ++  KR   PKVRGV MNPV+HPHGGG
Sbjct:  119 GSEAPISRGNALPLSKMPLGTTIHNVEITPGKGGQLARAAGAVAKLIAK--EGRLATLRSPSGEVRLISQDCLATVGQIGNADINNKNFGKAGSK--RWLGKR---PKVRGVVMNPVDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_XANP2 (50S ribosomal protein L2 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 52/139 (37.41%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 423
            G++  +  GN  P+ S+P G +V NVE  VG  G +AR++G YA I+    D     V+L SG ++++   C A +G V+        L KAG         RN W    P  RGV MNPV+HPHGGG  +  G  + V
Sbjct:  119 GEQVDVKPGNAGPLSSLPVGTIVHNVELKVGKGGQIARSAGTYAQIVGR--DQGYVIVRLNSGEQRLVLGACYATVGAVSNPDHMNISLGKAG---------RNRWLGRKPHNRGVTMNPVDHPHGGGEGRTSGGRNPV 246          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_THISH (50S ribosomal protein L2 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN LP+R+IP G VV  +E   G    +AR++G    +++    + T R++  SG  + +P+ CRA IG+V+    + +   KAG        KR  W    P VRG AMNPV+HPHGGG  ++ G
Sbjct:  119 GTNAPIRAGNTLPLRNIPVGTVVHCIEMKPGKGAQMARSAGAAVQLVAREGQHATLRLR--SGEMRKVPADCRATIGEVSNSEHSLRKFGKAG-------AKR--WLGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_THEM4 (50S ribosomal protein L2 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 411
            G  A +  GN LP+ +IP G V+ NVE+  G  G +AR++G    +++   +     +++PSG  + +P  C A IG V       +   KAG    K R      P VRGVAMNPV+HPHGGG  +  GH
Sbjct:  119 GPDAEIKPGNALPLENIPVGTVIHNVEYIPGKGGQIARSAGTSCQLMAK--EGKYALLRMPSGELRKVPVKCYATIGVVGNEDHKNEVDGKAGRVRWKGRK-----PHVRGVAMNPVDHPHGGGEGRGKGH 242          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SYNP2 (50S ribosomal protein L2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            G++A   +GN LP+  IP G  + N+E + G  G + R++G +A +++   + D   +KLPS   +++   C A IG+V         L KAG   H  R      P+VRG  MNPV+HPHGGG
Sbjct:  119 GEEAPYEIGNALPLYKIPLGTEIHNIELYAGRGGQMVRSAGAFAQLVA--KEGDYVTIKLPSKEVRMVRKECYATIGKVGNAEARNLKLGKAGRTRHLGR-----RPQVRGSVMNPVDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_PSEA6 (50S ribosomal protein L2 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN LP+R+IP G  V  +E   G    +AR++G YA I++      T R++  SG  + + + CRA IG++       + L KAG N +   R      P VRGVAMNPV+HPHGGG  +  G
Sbjct:  119 GSDAAIKAGNSLPMRNIPVGTTVHAIEMKPGKGAQIARSAGQYAQILARAEGYVTLRLR--SGEVRRVLADCRATIGEIGNAEHMLRSLGKAGANRWRGIR------PTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_ORITI (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   25 KATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            KA + VGN LP+  IP G ++ N+E   G  G +AR++G YAV++  N D+   ++K  SG  + I    RA +G V+          KAG    ++  +R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  121 KAEINVGNCLPLEVIPVGTIIHNIEIKPGKGGQVARSAGTYAVLL--NKDSGYAQIKFRSGEVRRISLASRATVGSVSNIDHKNISYGKAGRV--RWLGRR---PVVRGVAMNPVDHPHGGGEGKTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_NEIMB (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup B GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGGG
Sbjct:  119 GAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_NEIG2 (50S ribosomal protein L2 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGGG
Sbjct:  119 GAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235          
The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_OLTVI1.045e-1539.5350S ribosomal protein L2, chloroplastic OS=Oltmann... [more]
RK2_ANGEV1.045e-1540.3250S ribosomal protein L2, chloroplastic OS=Angiopt... [more]
RL2_XANP21.365e-1537.4150S ribosomal protein L2 OS=Xanthobacter autotroph... [more]
RL2_THISH1.365e-1537.3150S ribosomal protein L2 OS=Thioalkalivibrio sp. (... [more]
RL2_THEM41.365e-1538.1750S ribosomal protein L2 OS=Thermosipho melanesien... [more]
RL2_SYNP21.365e-1537.1050S ribosomal protein L2 OS=Synechococcus sp. (str... [more]
RL2_PSEA61.365e-1538.9350S ribosomal protein L2 OS=Pseudoalteromonas atla... [more]
RL2_ORITI1.365e-1539.8450S ribosomal protein L2 OS=Orientia tsutsugamushi... [more]
RL2_NEIMB1.365e-1540.0050S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_NEIG21.365e-1540.0050S ribosomal protein L2 OS=Neisseria gonorrhoeae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bp
GTCAGTTCGTGCACTGTCGGCAAGAAAGCCACTCTGATGGTTGGTAATGT
GTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGC
ATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCC
GTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCC
ATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGC
AGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAAT
GCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGG
TGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGC
ACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAG
GTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGC
TGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAA
ATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTA
CCTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTA
AATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTA
GTTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCAAATTAA
GTAAATGGAAATGTTGTTTTTATCTGAAAAA
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