CF832066

Overview
NameCF832066
Unique NameCF832066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:325..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SHEPA (50S ribosomal protein L2 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 51/130 (39.23%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN LP+R+IP G+VV  VE        +AR++G Y  +I+   D     ++L SG  + +P  CRA +G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  119 GIDAEIKSGNALPLRNIPVGSVVHAVEMKPAKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAGA-----KRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_SHEFN (50S ribosomal protein L2 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 50/130 (38.46%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN  P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  119 GLDAEIKTGNARPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGA-----KRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_RHOPB (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 1
Query:   43 GNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            GNV+P+ ++P G +V NVE  +G  G +AR++G YA ++    D+D   V+L SG ++++   C A IG V+        + KAG +    R   N     RGV MNPV+HPHGGG  +  G
Sbjct:  127 GNVMPLGNMPIGTIVHNVELKIGKGGQIARSAGTYAQLVGR--DHDYVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRSRWLGRKPHN-----RGVTMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_RHOP5 (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 48/123 (39.02%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   43 GNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW-PKVRGVAMNPVEHPHGGGNHQHIG 408
            GNV+P+ ++P G +V NVE  +G  G +AR++G YA ++    D+D   V+L SG +++I   C A IG V+        + KAG      R +   W P  RGV MNP++HPHGGG  +  G
Sbjct:  127 GNVMPLGNMPIGTIVHNVEMKIGKGGQIARSAGTYAQLVGR--DHDYVIVRLNSGEQRLIHGRCTATIGAVSNPDHMNISIGKAG------RTRWLGWRPHNRGVVMNPIDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_RHOFD (50S ribosomal protein L2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 49/129 (37.98%), Postives = 73/129 (56.59%), Query Frame = 1
Query:    4 SSCTVGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            +S   G +A + VGN LP+R+IP G++V  +E  +G    + R++G  A +++   +    +V++ SG  + I   CRA +GQVA    + + L KAG    K        P VRGV MNPV+HPHGGG
Sbjct:  114 ASIMSGAEAPIRVGNTLPIRNIPVGSIVHCIELQIGKGAQIVRSAGTSATLLAR--EGIYAQVRMRSGEVRKIHIECRATLGQVANEEHSLRRLGKAGAKRWK-----GIRPTVRGVVMNPVDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_NEIM0 (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGGG
Sbjct:  119 GAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEAAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_MYCPU (50S ribosomal protein L2 OS=Mycoplasma pulmonis GN=rplB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 450
            G+   ++VGN L + +IPEG  + N+E      G+LAR++G YA I+          ++L SG  + + + CRA IG V     +   + KAG   HK        P VRG  MNP++HPHGGG   Q IG  + +    P G+K
Sbjct:  120 GENVDIIVGNSLELANIPEGTNIHNIELQPKGGGILARSAGSYAQILGKEESGKYVLIRLKSGEVRKVFAKCRATIGIVGNEEHSLVNIGKAGRNRHK-----GIRPTVRGSVMNPIDHPHGGGEGKQPIGRKAPL---TPWGKK 256          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_DESAD (50S ribosomal protein L2 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 51/134 (38.06%), Postives = 73/134 (54.48%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 408
            G+KA +  GN L +++IP G +V N+E + G  G   RA+G YA +I+   +     +++PSG  + + + C A +GQV         L KAG         RN W    PKVRGVAMNP++HP GGG  +  G
Sbjct:  119 GEKADIKPGNALLLKNIPVGTIVHNIELYPGKGGQFCRAAGTYAQLIA--KEGKYALLRMPSGEVRKVLATCCATVGQVGNIHHENITLGKAG---------RNRWLGRRPKVRGVAMNPIDHPLGGGEGRSSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_CLOTH (50S ribosomal protein L2 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 51/140 (36.43%), Postives = 75/140 (53.57%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQH-IGHASTV 423
            G+ A +  GN LP+ +IP G  + N+E   G  G L R++G+ A +++   + +  +++LPSG  +++   C+A IGQV         + KAG         R  W    P VRGV MNPV+HPHGGG  +  IG  S V
Sbjct:  119 GENADIKPGNALPLENIPVGTEIHNIELKPGKGGQLVRSAGNVAQLMAK--EGNYAQIRLPSGEVRMVSLKCKATIGQVGNIDHENVSIGKAG---------RKRWMGIRPTVRGVVMNPVDHPHGGGEGKSPIGRPSPV 247          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_AZOC5 (50S ribosomal protein L2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 49/134 (36.57%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 408
            G++  +  GN  P+ ++P G +V NVE  +G  G +AR++G YA I+    D     V+L SG +++I   C A +G V+        L KAG         R+ W    P  RGV MNPV+HPHGGG  +  G
Sbjct:  119 GEQVDVKPGNAAPLSNLPVGTIVHNVEMKIGKGGQIARSAGSYAQIVGR--DQGYVIVRLNSGEQRLIHGACYATVGAVSNPDHMNTSLGKAG---------RSRWLGVKPHNRGVTMNPVDHPHGGGEGRTSG 241          
The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SHEPA1.782e-1539.2350S ribosomal protein L2 OS=Shewanella pealeana (s... [more]
RL2_SHEFN1.782e-1538.4650S ribosomal protein L2 OS=Shewanella frigidimari... [more]
RL2_RHOPB1.782e-1538.5250S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_RHOP51.782e-1539.0250S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_RHOFD1.782e-1537.9850S ribosomal protein L2 OS=Rhodoferax ferrireduce... [more]
RL2_NEIM01.782e-1540.0050S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_MYCPU1.782e-1535.8650S ribosomal protein L2 OS=Mycoplasma pulmonis GN... [more]
RL2_DESAD1.782e-1538.0650S ribosomal protein L2 OS=Desulfovibrio salexige... [more]
RL2_CLOTH1.782e-1536.4350S ribosomal protein L2 OS=Clostridium thermocell... [more]
RL2_AZOC51.782e-1536.5750S ribosomal protein L2 OS=Azorhizobium caulinoda... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bp
GTCAGTTCGTGCACTGTCGGCAAGAAAGCCACTCTGATGGTTGGTAATGT
GTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGC
ATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCC
GTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCC
ATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGC
AGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAAT
GCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGG
TGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGC
ACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAG
GTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGC
TGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAA
ATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTA
CCTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTA
AATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTA
GTTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCAAATTAA
GTAAATGGAAATGTTGTTTTTATCTGAAAAA
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