CF832066
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.895e-33 Identity = 69/148 (46.62%), Postives = 95/148 (64.19%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462 G A + GN++P+ ++PEG +CNVE D G R+SG YA +++H T V +PSG K + CRA++G VAG GR ++P LKAG YHK + + +P+V VAMNP +HP GGG +H G +TV R+APPG+KVGLI Sbjct: 84 GDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTHEATR--TAVSMPSGNIKWLNPKCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.476e-33 Identity = 72/150 (48.00%), Postives = 90/150 (60.00%), Query Frame = 1 Query: 13 TVGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462 T G A + GN LP++ IP G+ VCN+E + D G RASG A + V++PSG+ K CRA IG VAGGGR+EKP +KAG YHK + + WP+VRG AMN ++HP GGG HQH G TV R PG+KVG I Sbjct: 81 TWGADAEIRNGNTLPLQEIPTGSSVCNIEAYPNDGGKFVRASGVQATVTDKMEGR--VAVRMPSGSTKWFNGQCRATIGIVAGGGRSEKPFVKAGKKYHKMKNTASNWPRVRGFAMNVIDHPFGGGGHQHAGRPKTVSRGTSPGRKVGHI 228
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.223e-33 Identity = 72/149 (48.32%), Postives = 96/149 (64.43%), Query Frame = 1 Query: 16 VGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462 +G+ A+ GNV+ + PEG +V NVE GD G AR+ G YAV++ P+ + T V+LPSG + + RA +G VAGGGR EKP++KAG Y++ R K +P VRG AM+P HPHGGG+HQ G + V + APPGQKVG I Sbjct: 81 IGEAASPKTGNVVVLGKAPEGTMVFNVEKRPGDGGKFARSGGTYAVVVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAMSPYAHPHGGGSHQKGG--TPVSKTAPPGQKVGFI 227
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.407e-33 Identity = 67/138 (48.55%), Postives = 88/138 (63.77%), Query Frame = 1 Query: 43 GNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 456 GN LP++SIP G+ +CN+E D G R++G AV++ + D V++PSG K + CRA +G VAGGGR EKP +KAGN HK R + WP+VRGVAMN ++HP GGG HQH G T+ R PG+ VG Sbjct: 91 GNTLPLQSIPTGSYICNIESRPNDGGKFVRSTGVQAVVV--DKIGDRIGVRMPSGKTKWFNARCRATVGIVAGGGRVEKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDHPFGGGGHQHPGRPKTIARGTSPGRTVG 226
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_PYRIL (50S ribosomal protein L2P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl2p PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.229e-32 Identity = 72/147 (48.98%), Postives = 92/147 (62.59%), Query Frame = 1 Query: 16 VGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 456 VG A GN++ + +PEG +V NVE GD G ARA G YAV++ P+ + T ++LPSG + S RA +G VAGGGR EKP LKAG YH+ + K +P VRG AM+P HPHGGG+H G + V + APPGQKVG Sbjct: 82 VGDLAAPKTGNIVILGRVPEGTMVFNVEKRAGDGGKFARAGGTYAVVVGQKPEENKTIIRLPSGKVVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRAKAKAWKYPTVRGKAMSPYAHPHGGGSHPKGG--TPVPKTAPPGQKVG 226
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 8.805e-31 Identity = 66/146 (45.21%), Postives = 84/146 (57.53%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 456 G T+ GN LP+ IP GA VCN+E D G R+SG A++I D+ +++PSG K C A +G VAGGGR EKP +KAG + R WP+V+GV MN ++HP GGG HQH G TV R PG+KVG Sbjct: 83 GTGGTVKNGNTLPLGEIPVGAYVCNIEARPNDGGKFVRSSGVQALVIG-KADDGRVGIRMPSGKNKWFNGACMATVGIVAGGGRGEKPFVKAGKKHFHVRSSSERWPRVKGVCMNVIDHPFGGGGHQHCGRPKTVARGTSPGRKVG 227
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 4.370e-30 Identity = 67/146 (45.89%), Postives = 88/146 (60.27%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 456 G T+ G + +IP+G+ V N+E GD G R++G +A+++SH +KLPSG+ + CRA +G VA G + P+LKAG H R K VRGVAMN V HPHGGGNHQH+G STV R+APPG+KVG Sbjct: 79 GNVDTINPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHG---SRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVG 221
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29 Identity = 66/146 (45.21%), Postives = 87/146 (59.59%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 456 G ++ G + +IP+G+ V N+E GD G R++G +A+++SH +KLPSG + CRA +G VA G + P+LKAG H R K VRGVAMN V HPHGGGNHQH+G STV R+APPG+KVG Sbjct: 79 GNVDSVSPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHGQH---VTLKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVG 221
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 4.831e-29 Identity = 68/148 (45.95%), Postives = 95/148 (64.19%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462 G KA ++G+++ + ++PEG +V N+E GD G LAR+SG YA++++H+ N T ++LPS K + S RA IG VA GGR EKP+LKAG +H R K +P VRG AM+ HP GGG+H + R+APPG+KVG I Sbjct: 88 GAKAPAVLGSIVEIGNVPEGTIVSNIEIRPGDGGKLARSSGAYALVLAHS--NGKTLIQLPSKKVKEVSSEARATIGMVAAGGRIEKPMLKAGKMWHWSRAKSFKYPTVRGKAMSAYAHPAGGGHHPK--GLTPAPRNAPPGRKVGHI 231
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.836e-28 Identity = 65/148 (43.92%), Postives = 90/148 (60.81%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462 GK+A +G++ P+ IPEG + +E++ GD G L RASGD+A+++ D V+LPSG K + + RA+IG +AGGGR EKP +KAGN Y+ + WP V GV N +HP GG H + TV + APPG+KVG I Sbjct: 84 GKEAPNAIGSIKPLSEIPEGTKIYMLENNPGDGGKLVRASGDFALLVQKL--GDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHPFGGKRHSNHSKPFTVSKWAPPGRKVGYI 229 The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bpback to top |