CF832138

Overview
NameCF832138
Unique NameCF832138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: BH035_ARATH (Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.454e-13
Identity = 53/185 (28.65%), Postives = 93/185 (50.27%), Query Frame = -2
Query:  160 PTSGRESPLN-HVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLR--EQARKSKVVYNVYDNNQXXXXXXXXXXXXXXTHHLGININIMDVDVKIVGSEAM-IRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAI 702
            P     SP + ++ +ER RR++LN R +ALRSVVPN++KMDKAS++ DA++YI+ L+ +  +LEA++R  E   KS + ++   +                +      I ++++ V  +G   M + V C        KL +V   L   +  ++++S    +   V +   E    +EV+R  I
Sbjct:   45 PDGAASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSVTCNKRTDTMVKLCEVFESLNLKILTSNLTSFSGMIFHTVFIEADEE--EQEVLRLKI 227          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: TT8_ARATH (Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.218e-12
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = -2
Query:  487 LNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARK 678
            L+HV AER+RRE+LN +F  LRS+VP V+KMDK S+L D +AY+  LR +V ELE    EQ  K
Sbjct:  362 LSHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHHEQQHK 425          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: AMS_ARATH (Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.218e-12
Identity = 34/71 (47.89%), Postives = 53/71 (74.65%), Query Frame = -2
Query:  493 KPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQA 705
            K  SG+ S   ++ AER+RR++LN R YALRS+VP ++K+D+AS+L DA+ Y+KEL+ +  EL+ +L E +
Sbjct:  304 KKKSGKGSQAKNLMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELEENS 374          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: EGL1_ARATH (Transcription factor EGL1 OS=Arabidopsis thaliana GN=BHLH2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.077e-12
Identity = 48/182 (26.37%), Postives = 89/182 (48.90%), Query Frame = -2
Query:  241 DINVTSKKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQA----------------RKSKVVYNVYDNNQXXXXXXXXXXXXXXTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSS 738
            ++ + +KK    P +  E+  NH  +E++RRE+LN RF  LRS++P++SK+DK S+L D + Y+++L+ +V ELE+  RE A                 + +   N  ++ +                + G+  N+    +  +G+E +I ++C        ++MDV+ DL    H    S+
Sbjct:  385 EVPLMNKKEELLPDTPEETG-NHALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQELES-CRESADTETRITMMKRKKPDDEEERASANCMNSKRKGSDVNVGEDEPADIGYAGLTDNLR---ISSLGNEVVIELRCAWREGILLEIMDVISDLNLDSHSVQSST 561          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: BH061_ARATH (Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.077e-12
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  484 FTDINVTSKKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKS 744
            F  I  T+KKR  K   G+  P  ++ AER+RR+RLN R   LRS+VP ++KMD+ S+L DA+ Y+KEL  K+++L+   +E    S
Sbjct:  130 FISIGETNKKRSNKKLEGQ--PSKNLMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGSNS 214          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: SCRM2_ARATH (Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.713e-12
Identity = 36/90 (40.00%), Postives = 59/90 (65.56%), Query Frame = -2
Query:  472 TDINVTSKKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVY 741
            +D + T+  +G+K    +  P  ++ AER+RR++LN R Y LRSVVP +SKMD+AS+L DA+ Y+KEL  ++++L  +L      S  ++
Sbjct:  249 SDDHNTNNNKGKK----KGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELESTPPSSSSLH 334          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: BH027_ARATH (Transcription factor bHLH27 OS=Arabidopsis thaliana GN=BHLH27 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.044e-12
Identity = 55/196 (28.06%), Postives = 92/196 (46.94%), Query Frame = -2
Query:  184 PTSGRESPLN--HVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYN----------------VYDNNQXXXXXXXXXXXXXXTHHLGININIMDVDVKIVGSE-AMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSS----VRETMLQDVVVRIPEGLIS 702
            P     SP +  +V +ER RR++LN R +ALRSVVPN+SK+DKAS++ D++ Y++EL  +   LEA++RE   +S ++ N                  DNN                 H    I ++++ V  +G +  ++ + C        +L  VL  L  ++   + SS    +  T+   V + +   LIS
Sbjct:   43 PDGAATSPASSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRELESRSTLLENPVRDYDCNFAETHLQDFSDNNDMRSKKFKQMDYSTRVQH--YPIEVLEMKVTWMGEKTVVVCITCSKKRETMVQLCKVLESLNLNILTTNFSSFTSRLSTTLFLQVTLSLSPSLIS 236          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: ICE1_ARATH (Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.918e-11
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = -2
Query:  505 PLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKL 681
            P  ++ AER+RR++LN R Y LRSVVP +SKMD+AS+L DA+ Y+KEL  ++++L  +L
Sbjct:  305 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNEL 363          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: ARRS_MAIZE (Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.918e-11
Identity = 30/65 (46.15%), Postives = 50/65 (76.92%), Query Frame = -2
Query:  481 NHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSK 675
            NHV +ER+RRE+LN  F  L+S++P++ +++KAS+LA+ +AY+KEL+ +V ELE+     +R S+
Sbjct:  418 NHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQRRVQELESSREPASRPSE 482          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: ARLC_MAIZE (Anthocyanin regulatory Lc protein OS=Zea mays GN=LC PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.918e-11
Identity = 30/65 (46.15%), Postives = 50/65 (76.92%), Query Frame = -2
Query:  481 NHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSK 675
            NHV +ER+RRE+LN  F  L+S++P++ +++KAS+LA+ +AY+KEL+ +V ELE+     +R S+
Sbjct:  416 NHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQRRVQELESSREPASRPSE 480          
The following BLAST results are available for this feature:
BLAST of CF832138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
BH035_ARATH2.454e-1328.65Transcription factor bHLH35 OS=Arabidopsis thalian... [more]
TT8_ARATH1.218e-1256.25Transcription factor TT8 OS=Arabidopsis thaliana G... [more]
AMS_ARATH1.218e-1247.89Transcription factor ABORTED MICROSPORES OS=Arabid... [more]
EGL1_ARATH2.077e-1226.37Transcription factor EGL1 OS=Arabidopsis thaliana ... [more]
BH061_ARATH2.077e-1243.68Transcription factor bHLH61 OS=Arabidopsis thalian... [more]
SCRM2_ARATH2.713e-1240.00Transcription factor SCREAM2 OS=Arabidopsis thalia... [more]
BH027_ARATH6.044e-1228.06Transcription factor bHLH27 OS=Arabidopsis thalian... [more]
ICE1_ARATH3.918e-1152.54Transcription factor ICE1 OS=Arabidopsis thaliana ... [more]
ARRS_MAIZE3.918e-1146.15Anthocyanin regulatory R-S protein OS=Zea mays GN=... [more]
ARLC_MAIZE3.918e-1146.15Anthocyanin regulatory Lc protein OS=Zea mays GN=L... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01G01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832138 ID=CF832138; Name=CF832138; organism=Citrus sinensis; type=EST; length=841bp
CCTTTTTTTAATCAATTCACATGATAATTATAAGCTGCTACAAAACAAAA
GGCAGTATAATCTGAAAAACGGAAAAAGGACAGAACAAAAAAAAAAAAAC
GGATGCAGTTAATAAGCAAGATCGAGTAGTAAGCTAAACTAGTTTTGCAT
TCTTTGGAAAATAGCACTTCTAATAACCTCTTCACTAATCAATCCCTCGG
GAATCCTGACGACAACATCCTGAAGCATAGTCTCCCTCACGCTTGATACA
CTGGCATGATGAACATGAAACTCAAGATCTCTGAGCACATCCATCAATTT
AGCTGCCGGATAATTGATATCTGGGCATTGAACACGTATCATGGCTTCTG
ATCCTACAATCTTCACATCGACATCCATAATATTAATATTAATGCCAAGA
TGATGAGTAGTCGAAGACGACGTTGGCATCATGATTGTAGAGCCAGTGCT
TTGATTGTTGTCATAAACGTTGTACACCACCTTTGATTTTCTAGCCTGTT
CACGGAGTTTCGCCTCAAGTTCGTCAACCTTGGCCCTGAGCTCTTTGATG
TAGGCAACAGCATCAGCGAGTAAAGAAGCTTTGTCCATTTTGGAAACGTT
TGGAACCACAGAGCGGAGAGCATAGAAGCGATGATTAAGCCTCTCACGGC
GCTGCCTCTCTGCTTCCACGTGGTTGAGAGGAGACTCTCTTCCGCTTGTT
GGCTTTCTTCCTCGTTTTTTGGATGTAACATTAATGTCAGTAAATCCTGA
AACGAAGTGACCGTCTGAGTCAGAAGGCCCCGAATCTGAAGATGAACGGC
CAAAACCAGCAGCTAATTGTTCTTTCTTATTACATCGCCGG
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