CF832146

Overview
NameCF832146
Unique NameCF832146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10427 contig Csv1_Contig10427:1093..1922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832146 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.473e-18
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = -3
Query:  224 VNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVG 508
            +N+     P   G+  + CS+  +LP VSF +GG  F+LT   Y++K+ + D   C+ GF ALD+  P GPLWILGDVF+GPY  VFD  +  VG
Sbjct:  294 LNKAIGGYPFLNGQYFIQCSKTPTLPPVSFHLGGVWFNLTGQDYVIKILQSDVGLCLLGFQALDIPKPAGPLWILGDVFLGPYVAVFDRGDKNVG 388          
BLAST of CF832146 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.513e-18
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = -3
Query:  209 FDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 400
            F LTP+QYILK   G+A QCISGF+A+D A   GPLWILGDVFM PYHTVFDY N+ VGFAEAA
Sbjct:  207 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 266          
BLAST of CF832146 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.513e-18
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = -3
Query:  209 FDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 400
            F LTP+QYILK   G+A QCISGF+A+D A   GPLWILGDVFM PYHTVFDY N+ VGFAEAA
Sbjct:  222 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 281          
BLAST of CF832146 vs. ExPASy Swiss-Prot
Match: CARDE_CYNCA (Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.513e-18
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = -3
Query:  209 FDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 400
            F LTP+QYILK   G+A QCISGF+A+D A   GPLWILGDVFM PYHTVFDY N+ VGFAEAA
Sbjct:  165 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 224          
BLAST of CF832146 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.287e-18
Identity = 46/96 (47.92%), Postives = 57/96 (59.38%), Query Frame = -3
Query:  212 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNM----RVGFAEA 487
            +P   GE  + CS +  LP VSF +GG  F+LT   Y+++        C+SGF ALDV PP GP WILGDVF+G Y  VFD  +M    RVG A A
Sbjct:  306 IPLLAGEYIILCSEIPKLPAVSFLLGGVWFNLTAHDYVIQTTRNGVRLCLSGFQALDVPPPAGPFWILGDVFLGTYVAVFDRGDMKSSARVGLARA 401          
BLAST of CF832146 vs. ExPASy Swiss-Prot
Match: CATE_RAT (Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.801e-16
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = -3
Query:  212 SPM-GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 481
            +PM GE AVDC+ L+ +P V+F I G  + L+P  YIL         C SGF  LD+ PP GPLWILGDVF+  +++VFD  N +VG A A
Sbjct:  306 TPMDGEYAVDCATLNMMPNVTFLINGVSYTLSPTAYILPDLVDGMQFCGSGFQGLDIQPPAGPLWILGDVFIRKFYSVFDRGNNQVGLAPA 396          
BLAST of CF832146 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.801e-16
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = -3
Query:  212 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 472
            GE AV+C+ L+ +P V+FTI G  + L+P  Y L         C SGF  LD+ PP GPLWILGDVF+  +++VFD  N RVG A A
Sbjct:  313 GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPA 399          
BLAST of CF832146 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = -3
Query:  266 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMG 487
            +P   GE  + C ++SSLP V+  +GGK + L+P+ Y LKV +     C+SGF  +D+ PP GPLWILGDVF+G
Sbjct:  291 VPLIQGEYMIPCEKVSSLPQVTLKLGGKDYTLSPEDYTLKVSQAGTTVCLSGFMGMDIPPPGGPLWILGDVFIG 364          
BLAST of CF832146 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.938e-16
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = -3
Query:  212 DCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 457
            DCS +++LP V+ T+ G+ F LTP +Y+L+V E    +C+SGF  +++    G  WILGDVF+  Y+TVFD+ N +VGFA A
Sbjct:  301 DCSVINTLPNVTITVAGREFVLTPKEYVLEVTEFGKTECLSGFMGIEL--NMGNFWILGDVFISAYYTVFDFGNKQVGFATA 380          
BLAST of CF832146 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = -3
Query:  212 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 472
            GE AVDC+ L ++P V+F I    + L P  YIL         C SGF  LD+ PP GPLWILGDVF+  +++VFD  N +VG A A
Sbjct:  309 GEYAVDCATLDTMPNVTFLINEVSYTLNPTDYILPDLVDGMQFCGSGFQGLDIPPPAGPLWILGDVFIRQFYSVFDRGNNQVGLAPA 395          
The following BLAST results are available for this feature:
BLAST of CF832146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
NAPSA_MOUSE1.473e-1845.26Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
CARDG_CYNCA2.513e-1873.44Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDF_CYNCA2.513e-1873.44Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDE_CYNCA2.513e-1873.44Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 ... [more]
NAPSA_HUMAN4.287e-1847.92Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATE_RAT1.801e-1649.45Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3[more]
CATE_HUMAN1.801e-1649.43Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
CATD_SHEEP6.844e-1648.65Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
CATD_DICDI8.938e-1647.56Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]
CATE_MOUSE1.525e-1548.28Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01G07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832146 ID=CF832146; Name=CF832146; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTTTTGCACAAACCCAATAAGAGTCCAGGCACCCATTT
ATAAACAAAGTCCAACGTCTTGGGCTTCTCAACAGCTGTCATACATCAGA
GCATTTACATAGAACAGTTATTTAAGGTTTAGTTTCAACATCTTAAAGAA
ACAACTGAAATTCCACGAGGTACGGTTCACTGAGCATAATTTAAAACAAA
CTTATTTACGCGGCTTCAGCAAATCCCACTCTCATGTTGCTGTAGTCAAA
GACTGTGTGGTAGGGACCCATAAAAACATCCCCCAAGATCCAGAGAGGTC
CACGTGGTGGGGCAACATCTAGAGCTGAGAATCCACTTATACATTGAGCT
GCATCTCCCTCGCCCACTTTGAGGATGTACTGATCAGGAGTAAGGTCAAA
TATCTTTCCACCAATCGTAAAGGAAACAATAGGCAAGGAAGACAATCTGC
TACAGTCAACAGCCGATTCTCCCATAGGACTAGGCAACCGATCACAGAGC
TCATTGACATAGTTAAGAATGCGCTCTTGTGTTTGGTTCTGCTTGAGCTG
GTTCTGCATCCACACAACTGCCATCTCACAAGTAGAGCACATTGCATCAT
GGAAACCACCAGATGCTCTATGATTATTCTCAGGAACGACACTCTCAATG
CCCATACTCACACCTCGAGACCCATCAAATGTGCACAAACCAATCTGTGA
GCAAATTTTTTGAGGTTCATCCTTAGCTAAAAGCATATTGATGATCTCCT
CTCCATATTGTGAAACTACAGCCTTGCATTCTTGACTGACAATTCCAGTG
GCTCCAATGGCATGGTTGACTTGAGTTATGATGG
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