CF832148

Overview
NameCF832148
Unique NameCF832148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832148_ssr598 microsatellite CF832148_ssr598:598..611. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5157 contig Csv1_Contig5157:51..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19_HUMAN (40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 7.682e-40
Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = -3
Query:  178 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 579
            VKDV+  EFV+A AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19_BOVIN (40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 7.682e-40
Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = -3
Query:  178 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 579
            VKDV+  EFV+A AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19_PIG (40S ribosomal protein S19 (Fragment) OS=Sus scrofa GN=RPS19 PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 6.503e-39
Identity = 76/131 (58.02%), Postives = 96/131 (73.28%), Query Frame = -3
Query:  187 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAG 579
            VKDV+  EFV+A AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAXHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAG 136          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19_DICDI (40S ribosomal protein S19 OS=Dictyostelium discoideum GN=rps19 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.493e-39
Identity = 72/138 (52.17%), Postives = 103/138 (74.64%), Query Frame = -3
Query:  181 TAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS-KGGRRITSSGQRDLDQVAGRI 591
            TA  +KDV P EF+  YA  LK++G++++P WNDI KT T +EL P +PDW Y R A++ARK+Y+RGG GV ++RR++GG +RNG RP HF+  +G   R+ L QLQ+  +IE D+ KGGR IT++G+RDLD++A +I
Sbjct:    4 TAVTLKDVCPQEFIATYARFLKKTGRVQIPKWNDIAKTATYRELPPTNPDWIYYRIATLARKVYIRGGDGVATYRRVFGGNRRNGVRPNHFADVNGGNIRYCLKQLQNLKVIETDAVKGGRTITATGRRDLDRIAKQI 141          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19_ICTPU (40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.892e-38
Identity = 77/137 (56.20%), Postives = 99/137 (72.26%), Query Frame = -3
Query:  169 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 579
            VKDV+  EFV+A AA LK+SGK+++P W DIVK    KELAP D +W+YIRAAS  R +YLRGG+GVGS  +IYGG KRNG  P HFS  S +VAR +L  L+   ++E D  GGRR+T  G RDLD++AG++A  +
Sbjct:    8 VKDVNQQEFVRALAAFLKKSGKLKVPDWVDIVKLAKHKELAPCDDNWFYIRAASTVRHLYLRGGVGVGSMIKIYGGRKRNGVCPSHFSVGSKNVARKVLQALEALKMVEKDPNGGRRLTPQGTRDLDRIAGQVAAAS 144          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19B_SCHPO (40S ribosomal protein S19-B OS=Schizosaccharomyces pombe GN=rps19b PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38
Identity = 74/131 (56.49%), Postives = 92/131 (70.23%), Query Frame = -3
Query:  190 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVA 582
            +VKDV   +F+ AYAA LKRSGK+  P W DIVKTGT KELAPYDPDWYY+RAA++AR IYLR  +GVG   ++YGG    G RP H    SGSV R ++  L+   ++E    GGRRI+  GQRDLD++A
Sbjct:    5 SVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIA 135          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19_GILMI (40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.227e-38
Identity = 75/137 (54.74%), Postives = 101/137 (73.72%), Query Frame = -3
Query:  169 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 579
            VKDV+  EFV+A AA LK+SGK+++P W D+VK G  KELAP D +W+YIRAAS  R +YLRGG GVGS  +IYGG +RNG  P H+S+ S +VAR +L  L+   +IE D  GGRR+T+ G RDLD++AG+++  +
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGRHKELAPSDENWFYIRAASTVRHLYLRGGAGVGSMTKIYGGRQRNGVCPAHYSEGSKNVARKVLQALELLKMIEKDPNGGRRLTAQGTRDLDRIAGQVSAAS 142          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19A_SCHPO (40S ribosomal protein S19-A OS=Schizosaccharomyces pombe GN=rps19a PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.215e-38
Identity = 74/131 (56.49%), Postives = 92/131 (70.23%), Query Frame = -3
Query:  190 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVA 582
            +VKDV   +F+ AYAA LKRSGK+  P W DIVKTGT KELAPYDPDWYY+RAA++AR IYLR  +GVG   ++YGG    G RP H    SGSV R ++  L+   ++E    GGRRI+  GQRDLD++A
Sbjct:    5 SVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIA 135          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19_PAGMA (40S ribosomal protein S19 OS=Pagrus major GN=rps19 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.660e-37
Identity = 74/134 (55.22%), Postives = 98/134 (73.13%), Query Frame = -3
Query:  178 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 579
            VKDV+  EFV+A AA LK+SGK+++P W D+VK G  KELAP D +W+YIR+AS  R +YLRGG GVGS  +IYG  +RNG  P H+S  S +VAR +L  L+   +IE D  GGRR+T+ G RDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGKHKELAPSDENWFYIRSASTVRHLYLRGGAGVGSMTKIYGSRQRNGVCPAHYSVGSKNVARKVLQALELLKMIEKDPNGGRRLTAQGTRDLDRIAGQVA 139          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19_AEQIR (40S ribosomal protein S19 OS=Aequipecten irradians GN=RPS19 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.087e-37
Identity = 68/134 (50.75%), Postives = 96/134 (71.64%), Query Frame = -3
Query:  181 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRI 582
            +VKDV  H F KA AA LK+SGK+++P W  I+K     EL+PYD DW+Y RAAS+ R +Y+R   GVG+  +IYG  KRNG+ P H+ +SSGSVAR +L  L+   ++E D+ GGR++TS GQ+DLD++A ++
Sbjct:    4 SVKDVDSHTFTKALAAFLKKSGKMKIPEWATIIKLSKFNELSPYDEDWFYTRAASICRHLYIRSPAGVGALTKIYGDRKRNGTVPSHYCRSSGSVARRVLQALETQKLVEKDANGGRKLTSQGQKDLDRIAAQV 137          
The following BLAST results are available for this feature:
BLAST of CF832148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19_HUMAN7.682e-4057.4640S ribosomal protein S19 OS=Homo sapiens GN=RPS19... [more]
RS19_BOVIN7.682e-4057.4640S ribosomal protein S19 OS=Bos taurus GN=RPS19 P... [more]
RS19_PIG6.503e-3958.0240S ribosomal protein S19 (Fragment) OS=Sus scrofa... [more]
RS19_DICDI8.493e-3952.1740S ribosomal protein S19 OS=Dictyostelium discoid... [more]
RS19_ICTPU1.892e-3856.2040S ribosomal protein S19 OS=Ictalurus punctatus G... [more]
RS19B_SCHPO2.471e-3856.4940S ribosomal protein S19-B OS=Schizosaccharomyces... [more]
RS19_GILMI3.227e-3854.7440S ribosomal protein S19 OS=Gillichthys mirabilis... [more]
RS19A_SCHPO4.215e-3856.4940S ribosomal protein S19-A OS=Schizosaccharomyces... [more]
RS19_PAGMA4.660e-3755.2240S ribosomal protein S19 OS=Pagrus major GN=rps19... [more]
RS19_AEQIR6.087e-3750.7540S ribosomal protein S19 OS=Aequipecten irradians... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01G08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832148 ID=CF832148; Name=CF832148; organism=Citrus sinensis; type=EST; length=656bp
TTTTTTTTTTTTTTTTTAATATGAAAAAGAATATTCATTATCAATCCTTC
TTAGGTTACTAACAGAGAACTGAAAATCAACTAACGATGCTTTCTATCTA
CTACTCCCATTCAAACAACTAACTCAATAACATCAATCCTTTTGAAAGCT
TGAGCTAATCCCTCAAGGGGCAACAACTGCAATCCGTCCAGCAACTTGAT
CAAGATCCCGCTGCCCACTGGATGTGATTCTCCTTCCACCCTTGGAGTCA
AGCTCGATGATGTTCGTGTCCTGCAATTGGTGAAGTATGTGACGAGCAAC
AGAGCCACTGCTCTTGCTGAAATGAGGTGGGCGGCTACCGTTCCTCTTCC
CCCCTCCATAGATTCTACGGAAGGAACCAACACCAAGACCACCCCTCAAG
TAGATCTTCCTCGCCATTGAAGCAGCCCTGATATAGTACCAATCGGGGTC
ATAAGGGGCTAGCTCCTTCAACGTTCCAGTCTTGACGATGTCGTTCCAAG
TAGGAAGCTCAATCTTGCCGGAGCGCTTGAGATGGGCGGCGTAGGCCTTG
ACGAACTCGTGGGGAGAGACGTCCTTCACGTTTTTTGCAGTCTCCATTCT
CTCTCTCTCTCAGTCTGTGCTTCAGCGGCGGAGCAGCTGCGGTATGTGCT
ATGTGA
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