CF832149

Overview
NameCF832149
Unique NameCF832149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5157 contig Csv1_Contig5157:110..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19_EMENI (40S ribosomal protein S19 OS=Emericella nidulans GN=rps19 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.078e-34
Identity = 70/131 (53.44%), Postives = 90/131 (68.70%), Query Frame = 3
Query:   21 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD-SKGGRRITSSGQRDLDQVA 410
            V+DV   +F+ AYAA LKR GK+ +P W D VKT    EL P D DWYY+RAA++AR IYLR  +GVG  R+++G  K  GSRP H   +SG+V R +L  L+   ++E D  KGGRRIT SGQRDLD++A
Sbjct:    6 VRDVDAQKFIVAYAAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWYYVRAAAVARHIYLRKTVGVGRLRKVHGSTKNRGSRPAHHVDASGAVDRKVLQSLEKIGVLEQDEEKGGRRITQSGQRDLDRIA 136          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19S_ASCSU (40S ribosomal protein S19S OS=Ascaris suum GN=RPS19S PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.020e-34
Identity = 67/135 (49.63%), Postives = 94/135 (69.63%), Query Frame = 3
Query:   18 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-GRRITSSGQRDLDQVAGRI 419
            +VKDV  HE V+  A  LK+SGK+++P W+D+VK G  KELAP D DWYY+R AS+AR++Y+R   GVG+ RR+YGG KR G  P HF+++SGSV R  L  L+    +E    G GR +T  G++DLD++A ++
Sbjct:    6 SVKDVDQHEIVRYIAGFLKKSGKVKVPEWSDLVKLGITKELAPVDSDWYYVRTASVARRLYIRSPTGVGALRRVYGGNKRRGVTPNHFARASGSVIRKALQTLEAIKWVEKHPDGNGRILTKQGRKDLDRIASQM 140          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19A_DROME (40S ribosomal protein S19a OS=Drosophila melanogaster GN=RpS19a PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.170e-33
Identity = 66/133 (49.62%), Postives = 89/133 (66.92%), Query Frame = 3
Query:   21 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRI 419
            VKD+  H   KA A  LK++GK+++P   DIVKT   KELAPYDPDW+Y+R AS+ R +Y R   GVGS  +IYGG KRNG  P HF +++   AR  L  L+   ++E    GGR+++S GQRDLD++A +I
Sbjct:    6 VKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGGRKLSSIGQRDLDRIANQI 138          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19_ENTHI (40S ribosomal protein S19 OS=Entamoeba histolytica GN=RPS19 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.915e-32
Identity = 67/138 (48.55%), Postives = 91/138 (65.94%), Query Frame = 3
Query:    3 METAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGR 416
            M    N+KDV   +F+KAYA HLK+SGK+E+P W D VKTG  KELAP +PDW YIRAA++ARK+YL  G+GV + RR YG        P H +  SG V R+IL QL+   I+    + GR +T  G++D+D++A +
Sbjct:    1 MHHFSNIKDVVAIDFIKAYAEHLKKSGKLEIPEWVDTVKTGMCKELAPLNPDWIYIRAAAIARKVYLNNGIGVMALRRAYGDQYNKHYYPSHRTLGSGKVNRYILQQLEKMGIVG-KIQSGRSLTKEGRKDMDKIASK 137          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19G_ASCSU (40S ribosomal protein S19G OS=Ascaris suum GN=RPS19G PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.868e-31
Identity = 65/140 (46.43%), Postives = 93/140 (66.43%), Query Frame = 3
Query:    3 METAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-GRRITSSGQRDLDQVAGRI 419
            M  A +VKDV  HE V+  A  LK+SGK+++P W+D+ K G  KELAP + DWYY+R AS+AR++Y+R   GV + R +YGG KR G  P HF+K+SGSV R  L  L+    ++    G GR +T  G++DLD++A ++
Sbjct:    1 MVKATSVKDVDQHEIVQHIAKFLKKSGKVKVPEWSDVTKMGISKELAPLNSDWYYVRTASIARRLYVRSPTGVDALRLVYGGSKRRGVVPNHFAKASGSVIRKALQTLEAIKWVQKHPDGNGRVLTKQGRKDLDRIASQM 140          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19_CAEEL (40S ribosomal protein S19 OS=Caenorhabditis elegans GN=rps-19 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.439e-31
Identity = 64/137 (46.72%), Postives = 92/137 (67.15%), Query Frame = 3
Query:    3 METAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-GRRITSSGQRDLDQVA 410
            M  A ++KDV  HE  K+ A  LK+SGK+++P W+D+VK G  KELAP DPDW+Y RAAS+AR +Y R   G+G+F+++YGG KR G  P HF  S+G+  R  + QL+    +E    G GR ++  G++DLD++A
Sbjct:    1 MTRATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFRPA-GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRIA 136          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19B_YEAST (40S ribosomal protein S19-B OS=Saccharomyces cerevisiae GN=RPS19B PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.065e-30
Identity = 63/134 (47.01%), Postives = 93/134 (69.40%), Query Frame = 3
Query:   18 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPD-WYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGR 416
            +V+DV+  +F+ AYA+ L+R GK+E+P + DIVKT +  E+ P D + W+Y RAAS+AR IY+R  +GVG   ++YGG K  G RP     +SGS+ R +L  L+   I+E+  KGGRRI+ +GQRDLD++A +
Sbjct:    5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQ 138          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19A_YEAST (40S ribosomal protein S19-A OS=Saccharomyces cerevisiae GN=RPS19A PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.065e-30
Identity = 63/134 (47.01%), Postives = 93/134 (69.40%), Query Frame = 3
Query:   18 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPD-WYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGR 416
            +V+DV+  +F+ AYA+ L+R GK+E+P + DIVKT +  E+ P D + W+Y RAAS+AR IY+R  +GVG   ++YGG K  G RP     +SGS+ R +L  L+   I+E+  KGGRRI+ +GQRDLD++A +
Sbjct:    5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQ 138          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19B_DROME (40S ribosomal protein S19b OS=Drosophila melanogaster GN=RpS19b PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 5.623e-28
Identity = 61/133 (45.86%), Postives = 82/133 (61.65%), Query Frame = 3
Query:   21 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRI 419
            VK++  H   K  AA LK+SGKI +P     +KTG  KE AP D DW+Y R AS+ R +YLR   GVG+F ++Y G KRNG RP    +SS    R  L  L+  N++E    GGR++T  GQR+LD++A +I
Sbjct:    6 VKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASIMRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGGRKLTPQGQRNLDRIANKI 138          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19E_METTH (30S ribosomal protein S19e OS=Methanobacterium thermoautotrophicum GN=rps19e PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.402e-24
Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = 3
Query:   21 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRI 419
            V DV     +   A  LK   K++ P W + VKTG  KE  P +PDW+Y+RAA++ R++Y+ G +GV S R  YGG K  GSRP  F + SG++ R  L QL+++ +I+ + + GR IT  G+  LD+ A  +
Sbjct:    4 VYDVPADLLINRVAEELKNDSKVKSPEWVNFVKTGVHKERRPENPDWWYVRAAALLRRVYIDGPVGVNSLRTHYGGKKDRGSRPEKFRRGSGAIIRRALQQLEESGLIKRE-ENGRVITPEGRSFLDKAAAEV 135          
The following BLAST results are available for this feature:
BLAST of CF832149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19_EMENI3.078e-3453.4440S ribosomal protein S19 OS=Emericella nidulans G... [more]
RS19S_ASCSU4.020e-3449.6340S ribosomal protein S19S OS=Ascaris suum GN=RPS1... [more]
RS19A_DROME1.170e-3349.6240S ribosomal protein S19a OS=Drosophila melanogas... [more]
RS19_ENTHI4.915e-3248.5540S ribosomal protein S19 OS=Entamoeba histolytica... [more]
RS19G_ASCSU1.868e-3146.4340S ribosomal protein S19G OS=Ascaris suum GN=RPS1... [more]
RS19_CAEEL2.439e-3146.7240S ribosomal protein S19 OS=Caenorhabditis elegan... [more]
RS19B_YEAST2.065e-3047.0140S ribosomal protein S19-B OS=Saccharomyces cerev... [more]
RS19A_YEAST2.065e-3047.0140S ribosomal protein S19-A OS=Saccharomyces cerev... [more]
RS19B_DROME5.623e-2845.8640S ribosomal protein S19b OS=Drosophila melanogas... [more]
RS19E_METTH8.402e-2440.6030S ribosomal protein S19e OS=Methanobacterium the... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01G08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832149 ID=CF832149; Name=CF832149; organism=Citrus sinensis; type=EST; length=599bp
GAATGGAGACTGCAAAAAACGTGAAGGACGTCTCTCCCCACGAGTTCGTC
AAGGCCTACGCCGCCCATCTCAAGCGCTCCGGCAAGATTGAGCTTCCTAC
TTGGAACGACATCGTCAAGACTGGAACGTTGAAGGAGCTAGCCCCTTATG
ACCCCGATTGGTACTATATCAGGGCTGCTTCAATGGCGAGGAAGATCTAC
TTGAGGGGTGGTCTTGGTGTTGGTTCCTTCCGTAGAATCTATGGAGGGGG
GAAGAGGAACGGTAGCCGCCCACCTCATTTCAGCAAGAGCAGTGGCTCTG
TTGCTCGTCACATACTTCACCAATTGCAGGACACGAACATCATCGAGCTT
GACTCCAAGGGTGGAAGGAGAATCACATCCAGTGGGCAGCGGGATCTTGA
TCAAGTTGCTGGACGGATTGCAGTTGTTGCCCCTTGAGGGATTAGCTCAA
GCTTTCAAAAGGATTGATGTTATTGAGTTAGTTGTTTGAATGGGAGTAGT
AGATAGAAAGCATCGTTAGTTGATTTTCAGTTCTCTGATAGTAACCTAAG
ATGAATTGATAATGAATATTCTTTTTCATATTTAAAAAAAAAAAAAAAA
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