CF832173

Overview
NameCF832173
Unique NameCF832173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10550 contig Csv1_Contig10550:364..1057. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM2_HUMAN (Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.139e-44
Identity = 87/130 (66.92%), Postives = 102/130 (78.46%), Query Frame = -3
Query:  309 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALF 692
            RGTFIEFR+GMLN+SPIGR+CSQEER EF   DK  NIR K V+ LR++FA   LTFSIGGQISFDVFP GWDK YCLR++  D +  I+FFGDKT  GGNDHEIF   RT+G++VT+PEDT   C+ LF
Sbjct:  116 RGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPRTMGYSVTAPEDTRRICELLF 245          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM2_MOUSE (Phosphomannomutase 2 OS=Mus musculus GN=Pmm2 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.942e-44
Identity = 87/130 (66.92%), Postives = 102/130 (78.46%), Query Frame = -3
Query:  309 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLD--DFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALF 692
            RGTFIEFR+GMLN+SPIGR+CSQEER EF   DK  +IR K V+ LR++FA   LTFSIGGQIS DVFP+GWDK YCLR+L+   +  I+FFGDKT  GGNDHEIF   RTVG+TVT+PEDT   C+ LF
Sbjct:  112 RGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKEHIRQKFVADLRKEFAGKGLTFSIGGQISIDVFPEGWDKRYCLRHLEHAGYKTIYFFGDKTMPGGNDHEIFTDPRTVGYTVTAPEDTRRICEGLF 241          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM_CANAL (Phosphomannomutase OS=Candida albicans GN=PMM1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.313e-44
Identity = 78/123 (63.41%), Postives = 102/123 (82.93%), Query Frame = -3
Query:  330 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDD--FNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTM 692
            RGTFIEFR+GM+N+SPIGRN S +ER+++E++DK H+IR  MV  L+++F    LT+SIGGQISFDVFP GWDKTYCL++++D  F  IHFFGDK+YKGGND+EI+   RT+GH V SP+DT+
Sbjct:  120 RGTFIEFRNGMINVSPIGRNASTQERNDYEKFDKQHHIRETMVEALKKEFPDFGLTYSIGGQISFDVFPTGWDKTYCLQHVEDEHFENIHFFGDKSYKGGNDYEIYNDPRTIGHAVNSPDDTI 242          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM_CAEEL (Probable phosphomannomutase OS=Caenorhabditis elegans GN=F52B11.2 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.380e-44
Identity = 83/121 (68.60%), Postives = 94/121 (77.69%), Query Frame = -3
Query:  333 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL-DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDT 692
            RG F+EFR+GM+N+SPIGR+CSQEER +F  +DK H IR K    LREKF    L F+IGGQIS DVFP GWDKT+CL+YL  DF+ IHFFGDKT  GGNDHEIF  ERTVGHTV  PEDT
Sbjct:  113 RGNFVEFRNGMINLSPIGRSCSQEERMQFVEFDKKHGIRQKFTEQLREKFGQYGLQFAIGGQISVDVFPTGWDKTFCLQYLVPDFDTIHFFGDKTAPGGNDHEIFADERTVGHTVEGPEDT 233          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM1_DICDI (Phosphomannomutase 1 OS=Dictyostelium discoideum GN=pmmA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.380e-44
Identity = 87/131 (66.41%), Postives = 101/131 (77.10%), Query Frame = -3
Query:  309 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESER-TVGHTVTSPEDTMEKCKALF 692
            RGTF+EFR+GM+NISPIGRNCSQ+ER+EFE+YD  H IRP MVS+L+EKF  L L +SIGGQISFDVFP GWDKTYCLR+L  D +  I+FFGDKT+ GGND+EI    R T   TVTSP DT      LF
Sbjct:  116 RGTFVEFRNGMINISPIGRNCSQQEREEFEKYDLEHKIRPTMVSILKEKFQSLGLQYSIGGQISFDVFPIGWDKTYCLRHLPEDKYKTIYFFGDKTFVGGNDYEIANDPRITKSFTVTSPTDTKNFLSELF 246          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM2_BOVIN (Phosphomannomutase 2 OS=Bos taurus GN=PMM2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.644e-43
Identity = 86/130 (66.15%), Postives = 99/130 (76.15%), Query Frame = -3
Query:  309 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALF 692
            RGTFIEFR+GMLN+SPIGR+CSQEER EF   D+  NIR K V  LR++FA   LTFSIGGQISFDVFP GWDK YCL ++  D +  I+FFGDKT  GGNDHEIF   RTVG+TV +PEDT   C+ LF
Sbjct:  116 RGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDQKENIRQKFVEDLRKEFAGKGLTFSIGGQISFDVFPDGWDKRYCLGHVEKDGYKTIYFFGDKTMPGGNDHEIFTDPRTVGYTVAAPEDTRRICEELF 245          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM2_DICDI (Phosphomannomutase 2 OS=Dictyostelium discoideum GN=pmmB PE=3 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.010e-41
Identity = 83/134 (61.94%), Postives = 100/134 (74.63%), Query Frame = -3
Query:  300 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESER-TVGHTVTSPEDTMEKCKALFLAK 692
            RGTF+EFR+GMLNISPIGRNCSQ+ER+EFE+YD  H IR  MVS+L+E+F    L +SIGGQISFDVFP GWDKTYCLR+L  D+F  ++FFGDKT+ GGND+EI    R T   TV SP +T+      F  K
Sbjct:  116 RGTFVEFRNGMLNISPIGRNCSQQEREEFEKYDLEHKIRSTMVSILKEEFKSFGLQYSIGGQISFDVFPIGWDKTYCLRHLPEDEFKTLYFFGDKTFLGGNDYEIANHPRITQSFTVKSPANTLAILNDFFFKK 249          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM_DROME (Probable phosphomannomutase OS=Drosophila melanogaster GN=CG10688 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.477e-41
Identity = 75/123 (60.98%), Postives = 97/123 (78.86%), Query Frame = -3
Query:  333 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLD---DFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDT 692
            RGTFIEFR+GM+N+ PIGR C++EER+ F  YD  H +R KM+  L+++FA ++LT+SIGGQISFDVFP GWDKTYCLR+++    F EIHFFGDKT  GGND+EI+   RT+ H V +P+DT
Sbjct:  122 RGTFIEFRNGMMNVCPIGRQCTREERNMFAEYDIEHKVREKMIKDLKQEFADVDLTYSIGGQISFDVFPHGWDKTYCLRHIEAHYKFKEIHFFGDKTEPGGNDYEIYSDPRTISHRVYTPKDT 244          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM1_HUMAN (Phosphomannomutase 1 OS=Homo sapiens GN=PMM1 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.701e-40
Identity = 80/130 (61.54%), Postives = 96/130 (73.85%), Query Frame = -3
Query:  309 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALF 692
            RGTFIEFR+GMLNISPIGR+C+ EER EF   DK   IR K V  L+ +FA   L FS GG ISFDVFP+GWDK YCL  L  D F+ IHFFG++T  GGND EIF   RTVGH+V SP+DT+++C+ +F
Sbjct:  125 RGTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIFADPRTVGHSVVSPQDTVQRCREIF 254          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM1_MOUSE (Phosphomannomutase 1 OS=Mus musculus GN=Pmm1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.902e-40
Identity = 79/130 (60.77%), Postives = 97/130 (74.62%), Query Frame = -3
Query:  309 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDD--FNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALF 692
            RGTFIEFR+GMLN+SPIGR+C+ EER EF   DK   IR K V  L+ +FA   L FS GG ISFDVFP+GWDK YCL  LD+  F+ IHFFG++T  GGND EI+   RTVGH+V SP+DT+++C+ LF
Sbjct:  125 RGTFIEFRNGMLNVSPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVFPEGWDKRYCLDSLDEDSFDIIHFFGNETSPGGNDFEIYADPRTVGHSVVSPQDTVQRCRELF 254          
The following BLAST results are available for this feature:
BLAST of CF832173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PMM2_HUMAN1.139e-4466.92Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 ... [more]
PMM2_MOUSE1.942e-4466.92Phosphomannomutase 2 OS=Mus musculus GN=Pmm2 PE=2 ... [more]
PMM_CANAL3.313e-4463.41Phosphomannomutase OS=Candida albicans GN=PMM1 PE=... [more]
PMM_CAEEL7.380e-4468.60Probable phosphomannomutase OS=Caenorhabditis eleg... [more]
PMM1_DICDI7.380e-4466.41Phosphomannomutase 1 OS=Dictyostelium discoideum G... [more]
PMM2_BOVIN1.644e-4366.15Phosphomannomutase 2 OS=Bos taurus GN=PMM2 PE=2 SV... [more]
PMM2_DICDI2.010e-4161.94Phosphomannomutase 2 OS=Dictyostelium discoideum G... [more]
PMM_DROME4.477e-4160.98Probable phosphomannomutase OS=Drosophila melanoga... [more]
PMM1_HUMAN1.701e-4061.54Phosphomannomutase 1 OS=Homo sapiens GN=PMM1 PE=1 ... [more]
PMM1_MOUSE2.902e-4060.77Phosphomannomutase 1 OS=Mus musculus GN=Pmm1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01G23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832173 ID=CF832173; Name=CF832173; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTTAACGATATTTGTTTATTGGATTATGAAACGATATATTATAG
TGCTCATGTGCAGGTTTTTGCTGCCGCTACCGTGTTTTTAACGGAGATTT
TGCACTCCTACATCCAGCATGCAGGAACTTACCCCGCGATCAAACAACCG
CAACATATCCATACATCAAATACAACGAATCCAATTGGCAAATGCCTTTC
TCAATTGATCAAATAAAATTACATTGAATTGCTCGCATTAGAAATACGAA
TTATTCTCTCGTGTTTGTAGACTTACTATAACTTCTCCCAAATTCACGGT
TTAGCCAGGAAGAGAGCCTTACACTTTTCCATAGTATCCTCAGGGCTGGT
AACTGTGTGACCCACTGTTCGCTCGGATTCAAAAATTTCATGATCATTCC
CTCCCTTGTAAGTTTTGTCCCCAAAAAAGTGAATTTCATTGAAGTCATCA
AGGTATCTCAAGCAGTATGTCTTGTCCCATCCCTGGGGAAACACATCAAA
GCTTATCTGTCCTCCAATTGAAAATGTCAAGTTAAGGTGAGCAAACTTCT
CCCGAAGCACAGATACCATTTTTGGCCGTATATTGTGAATCTTGTCATAC
CTCTCAAACTCGTCCCTTTCTTCTTGGCTGCAGTTTCGCCCAATTGGTGA
AATATTAAGCATCCCACTTCGGAATTCAATGAAAGTTCCCCTTT
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