CF832188

Overview
NameCF832188
Unique NameCF832188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:890..1692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.661e-62
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPEVLFQPS IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIA RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  257 FRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.661e-62
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPEVLFQPS IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIA RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  257 FRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.475e-62
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPEVLFQPS+IGMEAAGIHETTYNSIMKCDVDIRKDLYG IVLSGGSTMFPGIA RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  257 FRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGKIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT7_SOLTU (Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.538e-62
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPEVLFQPS IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIA RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K E+DESGPSIVHRKCF
Sbjct:  257 FRCPEVLFQPSTIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEFDESGPSIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT2_PEA (Actin-2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.927e-62
Identity = 115/121 (95.04%), Postives = 118/121 (97.52%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPEVLFQPS+IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIA RMSKEITALAPSSMKIKVVAPPER+YSVWIGGSILASLSTFQQMWISK EYDE GPSIVHRKCF
Sbjct:  256 FRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERRYSVWIGGSILASLSTFQQMWISKAEYDERGPSIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT_PINCO (Actin (Fragment) OS=Pinus contorta PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.725e-61
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRC EVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIA RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EY+ESGPSIVHRKCF
Sbjct:   41 FRCAEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKTEYEESGPSIVHRKCF 161
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.725e-61
Identity = 114/121 (94.21%), Postives = 118/121 (97.52%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPEVLF P+LIGME+AGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIA RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  257 FRCPEVLFNPALIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSJ (Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.725e-61
Identity = 114/121 (94.21%), Postives = 118/121 (97.52%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPEV+FQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIA RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS+ EY+ESGP+IVHRKCF
Sbjct:  257 FRCPEVMFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISRAEYEESGPAIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSI (Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.725e-61
Identity = 114/121 (94.21%), Postives = 118/121 (97.52%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPEV+FQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIA RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS+ EY+ESGP+IVHRKCF
Sbjct:  257 FRCPEVMFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISRAEYEESGPAIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT1_ARATH (Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.725e-61
Identity = 114/121 (94.21%), Postives = 118/121 (97.52%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPEVL+QPS+IGME AGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIA RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  257 FRCPEVLYQPSMIGMENAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of CF832188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ACT1_ORYSJ2.661e-6295.87Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI2.661e-6295.87Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]
ACT1_TOBAC3.475e-6295.87Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT7_SOLTU4.538e-6295.87Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1[more]
ACT2_PEA5.927e-6295.04Actin-2 OS=Pisum sativum PE=2 SV=1[more]
ACT_PINCO1.725e-6195.87Actin (Fragment) OS=Pinus contorta PE=3 SV=1[more]
ACT_COLSC1.725e-6194.21Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT2_ORYSJ1.725e-6194.21Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE... [more]
ACT2_ORYSI1.725e-6194.21Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3... [more]
ACT1_ARATH1.725e-6194.21Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832188 ID=CF832188; Name=CF832188; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTTTTTTTTTGCAGCTGACACTAATTAAAGTTTTCTCGTACAATA
GCTATTAACATTAATGTTCCTTTTGAGAGGGGGAAAAAAAAAACCTTCAA
ATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCAT
CTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAA
AAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAG
TACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACAT
CAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCA
TGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATG
GAAAAAAAGAACTCACCCATCGAGCACTTAAAGAACTTAGAAGCATTTCC
TGTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCAC
ATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAAC
ACTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTG
GAGCAAGTGCTGTGATTTCCTTGCTCATACGGGCGGCAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCACATCACACTTCATGATGGAGTTGTAGGTAGTCTCATGAATACCAG
CAGCTTCCATTCCGATGAGAGATGGCTGGAACAGAACTTCTGGGCAACGG
AAT
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