CF832188

Overview
NameCF832188
Unique NameCF832188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACL7B_BOVIN (Actin-like protein 7B OS=Bos taurus GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.424e-23
Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = -2
Query:  443 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKC-DVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 802
            F+C E+LF+P+L+G    G+ E T   + +C +   ++++  N++L GG TM  G   R  +E++ L P      V A PERK SVW GGSILASL  FQQ+W+SK E++E G + ++ KC
Sbjct:  298 FQCAEMLFKPTLVGSNQPGLPELTAACLNRCQEAGFKEEMAANVLLCGGCTMLDGFPERFQRELSLLCPGDSPA-VAAAPERKTSVWTGGSILASLQAFQQLWVSKEEFEERGSAAIYSKC 417          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP2_ACACA (Actin-related protein 2 OS=Acanthamoeba castellanii GN=arp2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.208e-22
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = -2
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILASLSTFQ-QMWISKGEYDESGPSIVHRKCF 802
            F  PE +F P+L+  E+ G+ E  ++ I K D+D R + Y +IVLSGGSTM+PG+ +R+ KEI  L           +    K ++  PP RK+ V++GG++LA +   +   W++K EY+E GP ++ RKCF
Sbjct:  257 FEAPECMFNPALVDQESVGVGELVFDCINKADIDTRAEFYNHIVLSGGSTMYPGLPSRLEKEIKRLYFERVAKGNKVSMQKFKCRIEDPPRRKHMVFLGGAVLAEIMKDKTAFWMNKSEYEEQGPRVL-RKCF 388          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP4_USTMA (Actin-related protein 4 OS=Ustilago maydis GN=ARP4 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.515e-22
Identity = 55/110 (50.00%), Postives = 74/110 (67.27%), Query Frame = -2
Query:  443 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 763
            G  A G+ +   +SI   DVD R  LYGNIVL GGS++  G++ R+S E+   AP+  KIK+ +P    ER++S W+G SILASL TF Q+WISK EY+E G +IVH +C
Sbjct:  425 GKAAIGLADMVLSSINAVDVDSRPSLYGNIVLVGGSSLIQGLSDRLSYELGVKAPNQ-KIKIHSPGNTTERRHSSWLGASILASLGTFHQLWISKQEYEEHGAAIVHARC 533          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP2_DROME (Actin-related protein 2 OS=Drosophila melanogaster GN=Arp14D PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.515e-22
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = -2
Query:  449 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ-MWISKGEYDESGPSIVHR 802
            F  PE LFQP LI +E  GI E  +N+I   D+DIR +LY +IVLSGGSTM+PG+ +R+ +EI  L             +  KI++  PP RK  V+IGG++LA ++  +   W+SK EY E G  ++ +
Sbjct:  259 FEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLKNDTEKLAKFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQK 388          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTL9_MOUSE (Actin-like protein 9 OS=Mus musculus GN=Actl9 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.336e-21
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = -2
Query:  440 FRCPEVLFQPSLI-GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            F+CPE+LF P  I G+   G+      S++K   ++R  +  N++L GGS++F G+  R   E+         + V+A P R  SVWIGGSILASL  FQ  W+ + +Y+E GP +V+RKC+
Sbjct:  294 FQCPELLFHPPEIPGLSPIGLPAMAEQSLLKVPQELRPHVARNVILCGGSSLFTGLEGRFRAELLHSLSPEDHVVVMAHPNRNLSVWIGGSILASLHAFQSCWVLREQYEERGPQVVYRKCY 415          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP2_XENTR (Actin-related protein 2 OS=Xenopus tropicalis GN=actr2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.659e-21
Identity = 49/130 (37.69%), Postives = 76/130 (58.46%), Query Frame = -2
Query:  449 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR 802
            F  PE LFQP LI +E  G+ E  +N+I   D+D R + Y +IVLSGGSTM+PG+ +R+ +E+  L             S  KI++  PP RK+ V++GG++LA  +      W+++ EY E G  ++ +
Sbjct:  259 FEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRPEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGTRVLEK 388          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP2_RAT (Actin-related protein 2 OS=Rattus norvegicus GN=Actr2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.659e-21
Identity = 49/130 (37.69%), Postives = 76/130 (58.46%), Query Frame = -2
Query:  449 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR 802
            F  PE LFQP LI +E  G+ E  +N+I   D+D R + Y +IVLSGGSTM+PG+ +R+ +E+  L             S  KI++  PP RK+ V++GG++LA  +      W+++ EY E G  ++ +
Sbjct:  259 FEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP2_PONAB (Actin-related protein 2 OS=Pongo abelii GN=ACTR2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.659e-21
Identity = 49/130 (37.69%), Postives = 76/130 (58.46%), Query Frame = -2
Query:  449 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR 802
            F  PE LFQP LI +E  G+ E  +N+I   D+D R + Y +IVLSGGSTM+PG+ +R+ +E+  L             S  KI++  PP RK+ V++GG++LA  +      W+++ EY E G  ++ +
Sbjct:  259 FEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP2_MOUSE (Actin-related protein 2 OS=Mus musculus GN=Actr2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.659e-21
Identity = 49/130 (37.69%), Postives = 76/130 (58.46%), Query Frame = -2
Query:  449 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR 802
            F  PE LFQP LI +E  G+ E  +N+I   D+D R + Y +IVLSGGSTM+PG+ +R+ +E+  L             S  KI++  PP RK+ V++GG++LA  +      W+++ EY E G  ++ +
Sbjct:  259 FEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP2_HUMAN (Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.659e-21
Identity = 49/130 (37.69%), Postives = 76/130 (58.46%), Query Frame = -2
Query:  449 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR 802
            F  PE LFQP LI +E  G+ E  +N+I   D+D R + Y +IVLSGGSTM+PG+ +R+ +E+  L             S  KI++  PP RK+ V++GG++LA  +      W+++ EY E G  ++ +
Sbjct:  259 FEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388          
The following BLAST results are available for this feature:
BLAST of CF832188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ACL7B_BOVIN5.424e-2342.15Actin-like protein 7B OS=Bos taurus GN=ACTL7B PE=2... [more]
ARP2_ACACA1.208e-2239.10Actin-related protein 2 OS=Acanthamoeba castellani... [more]
ARP4_USTMA3.515e-2250.00Actin-related protein 4 OS=Ustilago maydis GN=ARP4... [more]
ARP2_DROME3.515e-2242.31Actin-related protein 2 OS=Drosophila melanogaster... [more]
ACTL9_MOUSE1.336e-2140.16Actin-like protein 9 OS=Mus musculus GN=Actl9 PE=2... [more]
ARP2_XENTR8.659e-2137.69Actin-related protein 2 OS=Xenopus tropicalis GN=a... [more]
ARP2_RAT8.659e-2137.69Actin-related protein 2 OS=Rattus norvegicus GN=Ac... [more]
ARP2_PONAB8.659e-2137.69Actin-related protein 2 OS=Pongo abelii GN=ACTR2 P... [more]
ARP2_MOUSE8.659e-2137.69Actin-related protein 2 OS=Mus musculus GN=Actr2 P... [more]
ARP2_HUMAN8.659e-2137.69Actin-related protein 2 OS=Homo sapiens GN=ACTR2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832188 ID=CF832188; Name=CF832188; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTTTTTTTTTGCAGCTGACACTAATTAAAGTTTTCTCGTACAATA
GCTATTAACATTAATGTTCCTTTTGAGAGGGGGAAAAAAAAAACCTTCAA
ATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCAT
CTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAA
AAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAG
TACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACAT
CAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCA
TGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATG
GAAAAAAAGAACTCACCCATCGAGCACTTAAAGAACTTAGAAGCATTTCC
TGTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCAC
ATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAAC
ACTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTG
GAGCAAGTGCTGTGATTTCCTTGCTCATACGGGCGGCAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCACATCACACTTCATGATGGAGTTGTAGGTAGTCTCATGAATACCAG
CAGCTTCCATTCCGATGAGAGATGGCTGGAACAGAACTTCTGGGCAACGG
AAT
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