CF832188

Overview
NameCF832188
Unique NameCF832188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:890..1692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTH_HUMAN (Actin, gamma-enteric smooth muscle OS=Homo sapiens GN=ACTG2 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.044e-58
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  256 FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKPEYDEAGPSIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTH_CHICK (Actin, gamma-enteric smooth muscle OS=Gallus gallus GN=ACTG2 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.044e-58
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  256 FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKPEYDEAGPSIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTH_BOVIN (Actin, gamma-enteric smooth muscle OS=Bos taurus GN=ACTG2 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.044e-58
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  256 FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKPEYDEAGPSIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTC_XENLA (Actin, alpha cardiac muscle 1 OS=Xenopus laevis GN=actc1 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.044e-58
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  257 FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTC_RAT (Actin, alpha cardiac muscle 1 OS=Rattus norvegicus GN=Actc1 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.044e-58
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  257 FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTC_MOUSE (Actin, alpha cardiac muscle 1 OS=Mus musculus GN=Actc1 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.044e-58
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  257 FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTC_HUMAN (Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=ACTC1 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.044e-58
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  257 FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTC_HELTI (Actin, cytoplasmic OS=Helisoma trivolvis PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.044e-58
Identity = 106/121 (87.60%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE ++QPS +GME+AGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIA RM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  256 FRCPEAMYQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTC_HALRO (Actin, nonmuscle OS=Halocynthia roretzi GN=CA1 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.044e-58
Identity = 107/121 (88.43%), Postives = 112/121 (92.56%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIA RM KEI ALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  256 FRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIVALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTC_CHICK (Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=ACTC1 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.044e-58
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  257 FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of CF832188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ACTH_HUMAN3.044e-5887.60Actin, gamma-enteric smooth muscle OS=Homo sapiens... [more]
ACTH_CHICK3.044e-5887.60Actin, gamma-enteric smooth muscle OS=Gallus gallu... [more]
ACTH_BOVIN3.044e-5887.60Actin, gamma-enteric smooth muscle OS=Bos taurus G... [more]
ACTC_XENLA3.044e-5887.60Actin, alpha cardiac muscle 1 OS=Xenopus laevis GN... [more]
ACTC_RAT3.044e-5887.60Actin, alpha cardiac muscle 1 OS=Rattus norvegicus... [more]
ACTC_MOUSE3.044e-5887.60Actin, alpha cardiac muscle 1 OS=Mus musculus GN=A... [more]
ACTC_HUMAN3.044e-5887.60Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=A... [more]
ACTC_HELTI3.044e-5887.60Actin, cytoplasmic OS=Helisoma trivolvis PE=3 SV=1[more]
ACTC_HALRO3.044e-5888.43Actin, nonmuscle OS=Halocynthia roretzi GN=CA1 PE=... [more]
ACTC_CHICK3.044e-5887.60Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832188 ID=CF832188; Name=CF832188; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTTTTTTTTTGCAGCTGACACTAATTAAAGTTTTCTCGTACAATA
GCTATTAACATTAATGTTCCTTTTGAGAGGGGGAAAAAAAAAACCTTCAA
ATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCAT
CTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAA
AAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAG
TACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACAT
CAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCA
TGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATG
GAAAAAAAGAACTCACCCATCGAGCACTTAAAGAACTTAGAAGCATTTCC
TGTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCAC
ATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAAC
ACTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTG
GAGCAAGTGCTGTGATTTCCTTGCTCATACGGGCGGCAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCACATCACACTTCATGATGGAGTTGTAGGTAGTCTCATGAATACCAG
CAGCTTCCATTCCGATGAGAGATGGCTGGAACAGAACTTCTGGGCAACGG
AAT
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