CF832189

Overview
NameCF832189
Unique NameCF832189
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:29..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832189 vs. ExPASy Swiss-Prot
Match: ARP10_BOVIN (Actin-related protein 10 OS=Bos taurus GN=ACTR10 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 53/200 (26.50%), Postives = 95/200 (47.50%), Query Frame = 2
Query:  122 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAERE 721
            +V D G    K GFAG+  PR + PS++ +                    A   + I  ++Y I    + ++  +++  H  ++  L V P +  V++ E+ L P   RE +T+++F+ F VP++ +A   +++L   G  + +VLD G   S  +PIYEG  + +    L L G+ L   L   L E+  + T  A+ +
Sbjct:   16 VVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKPIRVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTGAAKEQ 193          
BLAST of CF832189 vs. ExPASy Swiss-Prot
Match: ARP6_MOUSE (Actin-related protein 6 OS=Mus musculus GN=Actr6 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 56/218 (25.69%), Postives = 100/218 (45.87%), Query Frame = 2
Query:  122 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTG-----IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYV 757
            LV DNG    K G++ D    +V P+   R +   +      +     DE +   G+  +  P + G + NWD   ++W + F  E+ +V   +  +++TE   N  + +E M +I+FE +   A+       LS +   R        I++DSG   +H VP         AI+R+++ G+ LT+ L +I++ R        E  ++  +KE + YV
Sbjct:    4 LVLDNGAYNAKIGYSHDSV--SVIPNCQFRSKTARLKTFTANQI----DEIKDPSGLFYI-LPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYR--QLHVMDETHVINQVKEDVCYV 212          
BLAST of CF832189 vs. ExPASy Swiss-Prot
Match: ARP5_DROME (Actin-related protein 5 OS=Drosophila melanogaster GN=Arp5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 46/206 (22.33%), Postives = 96/206 (46.60%), Query Frame = 2
Query:  122 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-----HTGVMVGMGQK-------DAYVGDEAQSKRGILT-LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLS-----LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKIL 679
            LV DNG+   + G++    P   F +++ +PR           G   +       +  VG++  +   +   LK P E  +++NW+  E+I+ + F        +  +HP++LTEA  NP   R++M +++FE + +P++   I A+ S           +  +++  G   +H +P+ +G      + RL++ G  +   L +++
Sbjct:    7 LVIDNGSYECRVGWSDSKEPDLRFRNVLTKPRKDRKKEAAASEGSASQTTVEQSAEIQVGNDITNIEAVRAHLKSPFERNVITNWNHQEQIFDYIFTKMGFDGQDKIDHPIILTEALANPNFCRQQMNELLFECYGIPSVSYGIDALYSWKHHQQKQKNISDALIISFGYSTTHVIPVLDGKLQLEHVRRLNVGGYHIITYLFRLM 212          
BLAST of CF832189 vs. ExPASy Swiss-Prot
Match: ARP6_HUMAN (Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 55/218 (25.23%), Postives = 101/218 (46.33%), Query Frame = 2
Query:  122 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTG-----IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYV 757
            LV DNG    K G++ ++   +V P+   R +   +      +     DE +   G+  +  P + G + NWD   ++W + F  E+ +V   +  +++TE   N  + +E M +I+FE +   A+       LS +   R        I++DSG   +H VP         AI+R+++ G+ LT+ L +I++ R        E  ++  +KE + YV
Sbjct:    4 LVLDNGAYNAKIGYSHENV--SVIPNCQFRSKTARLKTFTANQI----DEIKDPSGLFYI-LPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYR--QLHVMDETHVINQVKEDVCYV 212          
BLAST of CF832189 vs. ExPASy Swiss-Prot
Match: ARP6_CHICK (Actin-related protein 6 OS=Gallus gallus GN=ACTR6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 56/218 (25.69%), Postives = 100/218 (45.87%), Query Frame = 2
Query:  122 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTG-----IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYV 757
            LV DNG    K G++   A  +V P+   R +   +      +     DE +   G+  +  P + G + NWD   ++W + F  E+ +V   +  +++TE   N  + +E M +I+FE +   A+       LS +   R        I++DSG   +H VP         AI+R+++ G+ LT+ L +I++ R        E  ++  +KE + YV
Sbjct:    4 LVLDNGAYNAKIGYS--HAHVSVIPNCQFRSKTARLKTFTANQL----DEIKDPSGLFYI-LPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFVDTNIIITEPYFNFSSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYR--QLHVMDETHVINQVKEDVCYV 212          
BLAST of CF832189 vs. ExPASy Swiss-Prot
Match: ARP6_CAEEL (Actin-like protein C08B11.6 OS=Caenorhabditis elegans GN=C08B11.6 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 55/218 (25.23%), Postives = 98/218 (44.95%), Query Frame = 2
Query:  122 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKY--PIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTT----GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYV 757
            ++ DNG   +K G    ++PR V  SIV + +H        +K  +V  E +      +L Y  PIE G V NWD  ++IW  TF   + V      + LT+      A  +  ++I+F+ F    ++    + L    S +       +V+DSG   +       G  +  +++R+D+ G+ LT+ L   ++ R      + E  ++ + KE L +V
Sbjct:    6 IIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHE-------KKRVFVAHEQEECSDKFSLFYVRPIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSASTLVAKHSNKINNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKALTNKLKDWVSYR--QLNVSEETYVINECKEDLCFV 212          
BLAST of CF832189 vs. ExPASy Swiss-Prot
Match: ARP5_DROPS (Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 50/209 (23.92%), Postives = 100/209 (47.85%), Query Frame = 2
Query:  122 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHT-----------GVMVGMGQK---DAYVGDEAQSKRGILT-LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSL--YASGR---TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKIL 679
            LV DNG+   + G+     P   F +++ +PR             G    +  +   +  VG++  +   +   LK P E  I++NW+  E+I+ + F  ++    E+   +P++LTEA  NP   R+ M++++FE + +PA+   I A+ S   Y + R   +  +++  G   +H +P+  G      + RL++ G  +   L+ ++
Sbjct:    8 LVIDNGSYECRVGWNNTKEPALRFRNVLTKPRKDRKKEAIPDTTDGAPTPVAAEVPAEIQVGNDITNIEAVRAHLKSPFERNIITNWNHQEQIFDYIF-TKMGFEGEQSIANPIVLTEALANPNFCRQNMSELLFECYGIPAVSYGIDALYSWEHYQNRRKKVSDALIISLGYSTTHVIPVLNGKLQLQHVRRLNVGGYHIITYLLCLM 215          
The following BLAST results are available for this feature:
BLAST of CF832189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
ARP10_BOVIN1.033e-1226.50Actin-related protein 10 OS=Bos taurus GN=ACTR10 P... [more]
ARP6_MOUSE6.699e-1225.69Actin-related protein 6 OS=Mus musculus GN=Actr6 P... [more]
ARP5_DROME6.699e-1222.33Actin-related protein 5 OS=Drosophila melanogaster... [more]
ARP6_HUMAN1.492e-1125.23Actin-related protein 6 OS=Homo sapiens GN=ACTR6 P... [more]
ARP6_CHICK2.545e-1125.69Actin-related protein 6 OS=Gallus gallus GN=ACTR6 ... [more]
ARP6_CAEEL4.342e-1125.23Actin-like protein C08B11.6 OS=Caenorhabditis eleg... [more]
ARP5_DROPS5.671e-1123.92Actin-related protein 5 OS=Drosophila pseudoobscur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832189 ID=CF832189; Name=CF832189; organism=Citrus sinensis; type=EST; length=759bp
CAAATACAGAGCGATAGAGAGAATCGACACTCTCAGCTAGACTCCATCTT
CGAATTTTTCTCTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCC
GATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGT
GAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCAGTATTCCCTAGTA
TTGTTGGTAGGCCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAG
GATGCCTATGTTGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTT
GAAATACCCAATTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAA
AGATCTGGCATCATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAG
CACCCAGTGCTTCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGA
GAAGATGACCCAAATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACG
TTGCCATCCAGGCTGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGT
ATTGTGCTGGATTCTGGTGATGGTGTGTCTCATACTGTACCAATTTATGA
GGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTG
ATCTCACTGATGCATTGATGAAGATTCTTACTGAGAGAGGTTACATGTTT
ACCACCACAGCCGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGC
TTATGTTGC
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