CF832190

Overview
NameCF832190
Unique NameCF832190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:507..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.329e-50
Identity = 88/148 (59.46%), Postives = 107/148 (72.30%), Query Frame = -2
Query:  183 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 626
            PC    QY+GRGP+QL+WN NY +CG A+GVDLLNNPDLL++DP +SFKSA W WMT Q PKPSCH VII  W PS++D  AGR  GYG+ TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  155 PCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.347e-50
Identity = 86/140 (61.43%), Postives = 106/140 (75.71%), Query Frame = -2
Query:  207 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 626
            PC     YYGRGP+QL+WN NY  CGEAL V+LL NPDL+ATD V+SFK+A+W WMT Q PKPSCH+V+   W+PSA D  AGRLPGYG+ TN++NGG+ECG   N  V +R+GFF  +CG  G+  G+NLDC NQRP+G
Sbjct:  104 PCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.347e-50
Identity = 87/148 (58.78%), Postives = 111/148 (75.00%), Query Frame = -2
Query:  183 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 626
            PC    +YYGRGPIQ+++N NY  CG A+G +LLNNPDL+AT+ VVSFKSAIW WMTAQ PKPSCH+VI   W PSA D  A RLPGYG+ TNIINGG+ECG+  +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  187 PCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.678e-50
Identity = 87/148 (58.78%), Postives = 112/148 (75.68%), Query Frame = -2
Query:  183 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 626
            PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFK+A+W WMT Q PKPSCH+VII  W PS+ D  A RLPG+G+ TNIINGG+ECG   ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  181 PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.416e-50
Identity = 89/151 (58.94%), Postives = 111/151 (73.51%), Query Frame = -2
Query:  174 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 626
            PC    QYYGRGPIQ++WN NY +CG A+GVDLLN PDL+ATD V+SFKSA+W WMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG   +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L+   + +S
Sbjct:  177 PCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.416e-50
Identity = 87/145 (60.00%), Postives = 110/145 (75.86%), Query Frame = -2
Query:  192 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMA 626
            PC    +Y+GRGPIQL++N NY   GEA+G DLLNNP+L+A+DPVVSFK+A+W WMT Q PKPSCH+VI  +W PS+ D+ AGR+PGYG+ TNIINGG+ECG+  +D V NRIGF+  +C   GI  G NLDC +QRP+   L A
Sbjct:  188 PCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.265e-49
Identity = 89/151 (58.94%), Postives = 110/151 (72.85%), Query Frame = -2
Query:  174 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 626
            PC    QYYGRGPIQ++WN NY +CG A+GVDLLN PDL+ATD V+SFKSA+W WMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG   +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L    + +S
Sbjct:  176 PCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 2.818e-49
Identity = 86/139 (61.87%), Postives = 104/139 (74.82%), Query Frame = -2
Query:  210 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 626
            PC    +YYGRGPIQ+T+N NY   G+A+G DLLNNPDL+A+D  VSFK+A W WMT Q PKPSCH VI  +W PSA+D  AGR+PGYG  TNIINGG+ECG+  +D V +RIGF+  +C   G+  GDNLDC NQRPY
Sbjct:  179 PCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.071e-48
Identity = 83/139 (59.71%), Postives = 104/139 (74.82%), Query Frame = -2
Query:  210 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 626
            PC     YYGRGP+QL+WN NY +CG A+G DLLNNPDL++ DPV++FK+AIW WMT Q PKPSCH VI+ +W+PS  D  AGR+PGYG+ TNIINGG+ECG   +  V +RIGF+  +C   G+ PG NLDC NQR +
Sbjct:  173 PCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.445e-47
Identity = 83/148 (56.08%), Postives = 109/148 (73.65%), Query Frame = -2
Query:  183 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 626
            PC    +YYGRGPIQ+++N NY + G+A+GVDL+NNPDL+ATD V+SFK+A W WMT Q PKPSCH VI   W PS  D +AGRLPG+G+ TNIINGG+ECG      V++RIGF+  +C    +  G+NLDC+NQRP+G  L+  ++
Sbjct:  167 PCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
The following BLAST results are available for this feature:
BLAST of CF832190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_GOSHI3.329e-5059.46Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHIT_CARPA4.347e-5061.43Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI3_TOBAC4.347e-5058.78Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIT_SOLTU5.678e-5058.78Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIT_PHAVU7.416e-5058.94Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI9_ORYSJ7.416e-5060.00Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_PHAVU1.265e-4958.94Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI3_ORYSJ2.818e-4961.87Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_BRANA1.071e-4859.71Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_VITVI3.445e-4756.08Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832190 ID=CF832190; Name=CF832190; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTGGAGAGACTCATTGATCCATGTTGGATCACCCT
TAATTAATTTACTTACAATAAGAGCGTAACAAACTAACCCTTTAGTTGTC
CACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGC
TTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGCCATCAG
ATTAAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCT
GAATCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTACGT
ACAGCGTCATTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATT
TGTGGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTG
ATGGTTTCCATTCATCGATAATGACTTCGTGGCACGATGGCTTTGGTGGC
TGTGCAGTCATCCACAACCAGATTGCTGACTTGAATGATACTACTGGATC
AGTGGCAAGTAGGTCTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTC
CGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTCGGCCA
TAGTATTGCCCTGGCAAGGGACATGGA
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