CF832190

Overview
NameCF832190
Unique NameCF832190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:507..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.499e-47
Identity = 85/139 (61.15%), Postives = 102/139 (73.38%), Query Frame = -2
Query:  210 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 626
            PC    +YYGRGPIQL++N NY   G A+GVDLL+NPDL+ATD  VSFK+A+W WMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+NGG+ECG+  +D V NRIGF+  +CG FGI  G NLDC NQRP+
Sbjct:  191 PCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.916e-46
Identity = 81/140 (57.86%), Postives = 103/140 (73.57%), Query Frame = -2
Query:  207 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 626
            PC    +Y+GRGPIQ+++N NY   G A+GV+LLNNPDL+A D VVSFK+A+W WMTAQ PKPS H+VI   W PS  D   GR+PG+G+ TNIINGG+EC    N  + NRIGF+  +C   G+ PG+NLDC+NQRP+G
Sbjct:  107 PCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.974e-46
Identity = 83/139 (59.71%), Postives = 104/139 (74.82%), Query Frame = -2
Query:  210 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 626
            PC    +YYGRGPIQLT N NY   G+A+  DL+NNPDLL+T+P VSFK+AIW WMT Q  KPS H+VI   W PSA D +AGR+PGYG+ TNIINGGIECG+  ++ V +R+GF+  +C  FG+ PG NLDC+NQR +
Sbjct:  181 PCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.974e-46
Identity = 84/139 (60.43%), Postives = 101/139 (72.66%), Query Frame = -2
Query:  210 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 626
            PC    +YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP VSFK+A+W WMTAQ PKPS H VI  +W PS  D  AGR PG+G+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  GDNLDC NQRP+
Sbjct:  127 PCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.447e-45
Identity = 78/139 (56.12%), Postives = 102/139 (73.38%), Query Frame = -2
Query:  210 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 626
            PC    +YYGRGPIQ+++N NY   G+A+G +LL+NPDL+A+D  VSFK+A W WMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  G NLDC NQRP+
Sbjct:  183 PCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.469e-45
Identity = 82/134 (61.19%), Postives = 100/134 (74.63%), Query Frame = -2
Query:  207 QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 608
            +YYGRGPIQLT   NY + G A+G +L+NNPDL+ATD  +SFK+AIW WMT Q  KPS H+VII  W PSA D  A R+PGYG+ TNIINGGIECG   NDAV +RIG++  +CG   + PG+NLDC NQR +G
Sbjct:  118 RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 181.8 bits (460), Expect = 2.469e-45
Identity = 82/139 (58.99%), Postives = 101/139 (72.66%), Query Frame = -2
Query:  210 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 626
            PC     YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP VSFK+A+W WMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  179 PCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.224e-45
Identity = 79/139 (56.83%), Postives = 105/139 (75.54%), Query Frame = -2
Query:  207 PLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGY-VGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 620
            P    YYGRGPIQLT   NY   G+ALG+DL+NNPDL+++DPVV+F++AIW WMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG+ TNIINGG ECG     D  ++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:  116 PSDPPYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.500e-45
Identity = 80/135 (59.26%), Postives = 101/135 (74.81%), Query Frame = -2
Query:  210 QYYGRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 608
            +YYGRGPIQLT   NY R G+ +GV  DL+NNPDL+ATDP++SF++AIW WMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC    N AV +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  116 RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.500e-45
Identity = 82/139 (58.99%), Postives = 100/139 (71.94%), Query Frame = -2
Query:  210 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 626
            PC     YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP VSFK+A+W WMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C    +  G+NLDC NQRP+
Sbjct:  182 PCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
The following BLAST results are available for this feature:
BLAST of CF832190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_ORYSJ4.499e-4761.15Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC2.916e-4657.86Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIX_PEA4.974e-4659.71Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIC_SECCE4.974e-4660.43Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI1_ORYSJ1.447e-4556.12Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIQ_TOBAC2.469e-4561.19Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI1_HORVU2.469e-4558.9926 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI11_ORYSJ3.224e-4556.83Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI5.500e-4559.26Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SECCE5.500e-4558.99Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832190 ID=CF832190; Name=CF832190; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTGGAGAGACTCATTGATCCATGTTGGATCACCCT
TAATTAATTTACTTACAATAAGAGCGTAACAAACTAACCCTTTAGTTGTC
CACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGC
TTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGCCATCAG
ATTAAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCT
GAATCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTACGT
ACAGCGTCATTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATT
TGTGGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTG
ATGGTTTCCATTCATCGATAATGACTTCGTGGCACGATGGCTTTGGTGGC
TGTGCAGTCATCCACAACCAGATTGCTGACTTGAATGATACTACTGGATC
AGTGGCAAGTAGGTCTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTC
CGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTCGGCCA
TAGTATTGCCCTGGCAAGGGACATGGA
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