CF832191

Overview
NameCF832191
Unique NameCF832191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:42..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832191 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.619e-26
Identity = 64/188 (34.04%), Postives = 97/188 (51.60%), Query Frame = 1
Query:  103 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTA 639
            CG G   G   +G G  G       +  +++   F  +   +N A   C  + FYT  AF+ A + +PGF + G++   KREIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM +
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGI---KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          
BLAST of CF832191 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.424e-25
Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = 1
Query:  106 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 633
            G G   G    G G+ G  +  +++   F  +   +N A   C  + FYT  AF+ A  A+PGF + G E   KREIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGI---KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
BLAST of CF832191 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.451e-24
Identity = 69/206 (33.50%), Postives = 101/206 (49.03%), Query Frame = 1
Query:  106 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWIPSANDVN 708
            G G   G    G G  G  +  +++   F  +   +N A   C  + FYT  +F+ AA ++ GF         KREIAAFFA   HET                CYI +++ AS D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM       + H+V++  +  +   +N
Sbjct:   68 GGGGGGGGGGGGGGGSGVSVESVVTEAFFNGI---KNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMN------NVHQVMLQGFGATIRAIN 251          
BLAST of CF832191 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.131e-24
Identity = 69/194 (35.57%), Postives = 96/194 (49.48%), Query Frame = 1
Query:   97 QNCGSGVVCGE----------RDTGHGTDGGELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 633
            Q C SG   G           R  G G  G  +  +++   F  +   +N A   C  + FYT  +F+ AA+++ GF N       KREIAAFFA   HET                CYI +++ A+ D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM
Sbjct:   53 QGCQSGPCWGSGGEAAAGMAGRKAGAGA-GVSVESVVTEAFFNGI---KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          
BLAST of CF832191 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23
Identity = 64/181 (35.36%), Postives = 87/181 (48.07%), Query Frame = 1
Query:  103 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 633
            CG+G   G   T        +   I    F + +  + D+ C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +CYI ++  AS D          P      Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          
The following BLAST results are available for this feature:
BLAST of CF832191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_MAIZE7.619e-2634.04Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE8.424e-2535.00Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI5_ORYSJ2.451e-2433.50Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ7.131e-2435.57Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU7.884e-2335.36Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832191 ID=CF832191; Name=CF832191; organism=Citrus sinensis; type=EST; length=730bp
GATAATTGATCCCGTTACTCTTGCTTTCAAATGAGGCTCATTGGGTCCTT
ACTCTTTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGA
ATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACG
GATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTT
GCTTCCGTATAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTT
ATGATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCT
GGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAAC
TGGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATG
CTTGGGGATATTGCTATATTAGGCAAGTTAGCCCTGCATCGTCCGACTAC
TGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGG
TCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCT
TGGGGGTGGACTTGTTGAACAATCCAGACCTACTTGCCACTGATCCAGTA
CTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAA
GCCATCGTGCCACGAAGTCATTATCGACGAATGGATACCATCAGCAAATG
ACGTAAACCCCGGCCGGCTTCCGGGATACG
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