CF832196

Overview
NameCF832196
Unique NameCF832196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.174e-49
Identity = 94/145 (64.83%), Postives = 112/145 (77.24%), Query Frame = -2
Query:  343 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 777
            KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   21 KVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.028e-47
Identity = 92/145 (63.45%), Postives = 111/145 (76.55%), Query Frame = -2
Query:  343 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 777
            KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y++ KGNVFKNKR+LME IHK KA++AR+K LSDQ EA+R+K
Sbjct:   21 KVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSK 165          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.754e-47
Identity = 91/145 (62.76%), Postives = 110/145 (75.86%), Query Frame = -2
Query:  343 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 777
            KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRE+KKID+HMYH +Y++ KGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R K
Sbjct:   21 KVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTK 165          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.896e-44
Identity = 85/146 (58.22%), Postives = 106/146 (72.60%), Query Frame = -2
Query:  340 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 777
            +VW+DPNE+ +++MANSR N+R+L+  GFI+RKP  +HSRSRAR    AKR GRH G G R GTREARLP+KI             +KYRE+KKIDKH Y ++Y+K KGNVFKNKR L+E I KSK EK REK + DQ +A+R KN
Sbjct:   21 RVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQARRNKN 166          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.006e-43
Identity = 84/146 (57.53%), Postives = 108/146 (73.97%), Query Frame = -2
Query:  340 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 777
            +VWLDPNEV+EIS ANSRQ+IR+LV DG IIRKP  +HSR RAR  +EA+RKGRH+GYGKR+GT  AR+P K              R+YR++KK+DKH+YH++Y++ KGN FKNK+ L+E I K K E  R K L+DQ +A+R KN
Sbjct:   21 RVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKN 166          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.423e-43
Identity = 84/145 (57.93%), Postives = 107/145 (73.79%), Query Frame = -2
Query:  343 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 777
            KVW+DPNE++EIS ANSRQNIRKLVKDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ +             RKYRES KIDKH+YH +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+
Sbjct:   21 KVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 5.838e-43
Identity = 82/145 (56.55%), Postives = 107/145 (73.79%), Query Frame = -2
Query:  343 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 777
            KVW+DPNE++EIS ANSRQN+RKL+KDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ +             RKYRES KIDKH+YH +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+
Sbjct:   21 KVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 168.318 bits (425), Expect = 4.184e-41
Identity = 80/146 (54.79%), Postives = 107/146 (73.29%), Query Frame = -2
Query:  340 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 777
            KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR R   ++KR+GRHSGYGKRKGTREARLP+++              KYR++ KIDKH+YH +Y + KGN FK+KR L+E I ++KA+  REK L+++ EA+R KN
Sbjct:   21 KVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKN 166          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_PYRHO (50S ribosomal protein L19e OS=Pyrococcus horikoshii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.399e-20
Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = -2
Query:  424 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVL 777
            +VW+DP +V+E++ A +R++IR+L+K+G I +KP +  SR RAR   E K+KGRH G G RKG + AR+  K              RK +E KKID+  Y  +Y++ KG  FKNK  L
Sbjct:   21 RVWIDPEKVDEVASAITREDIRRLIKEGVIRKKPIEGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRRELRKLKEQKKIDRKTYRMLYIRAKGGQFKNKHQL 138          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_PYRAB (50S ribosomal protein L19e OS=Pyrococcus abyssi GN=rpl19e PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.387e-20
Identity = 51/131 (38.93%), Postives = 76/131 (58.02%), Query Frame = -2
Query:  385 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAR 777
            ++W+DP  V++++ A +R++IR+L+K+G I +KP K  SR RAR   E K+KGRH G G RKG + AR+  K              RK +E KKID+  Y  +Y++ KG  FK+K  L   + +    K R
Sbjct:   21 RIWIDPERVDDVASAITREDIRRLIKEGVIKKKPVKGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKEQKKIDRRTYRMLYIRAKGGQFKSKHQLYMFLEEHNLLKKR 151          
The following BLAST results are available for this feature:
BLAST of CF832196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL19_BOVIN4.174e-4964.8360S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]
RL19_ICTPU1.028e-4763.4560S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_DANRE1.754e-4762.7660S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_DICDI6.896e-4458.2260S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19_CAEEL2.006e-4357.5360S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19B_SCHPO3.423e-4357.9360S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19A_SCHPO5.838e-4356.5560S ribosomal protein L19-A OS=Schizosaccharomyces... [more]
RL19_YEAST4.184e-4154.7960S ribosomal protein L19 OS=Saccharomyces cerevis... [more]
RL19_PYRHO1.399e-2043.2250S ribosomal protein L19e OS=Pyrococcus horikoshi... [more]
RL19_PYRAB2.387e-2038.9350S ribosomal protein L19e OS=Pyrococcus abyssi GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01H15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832196 ID=CF832196; Name=CF832196; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTAATGAACATAATACTCATCATTCAACCTCATTA
GAAACTACAAACGGTTCATATGGTTCCAAAATTCAAGGCTTTATAAGTAA
ATAATTTGCCATTAAACAGAAAACAAAATAACTTGGGAAACAAACTCCTA
CAAAGAAACCAGAACCAACATTAACATATATAAGTTATCAATCTTCAGTC
TCCATCATCGATGTATCAGCGATCACTTCTTAGCTTTCTTAGCTCCCTCA
GCTGGTTGGGGTGCTGGTACTGCCTTCTCTCCAGGTCCCTGTGCTAGTCG
CTCTTCTCTCCTGGCCAGCTTTCTCTCCCTGCTGGCCTTGTTCTTGGCGC
GCTTAGCCTCAAACTGGTCAGAAAGAGTCTTCTCTCTTGCCTTTTCAGCC
TTTGACTTGTGGATACTCTCCATGAGGACACGCTTGTTCTTAAATACATT
ACCCTTGACCTTCATGTACATGTCATGGTACATGTGCTTGTCAATTTTCT
TCGACTCACGGTATTTGCGGAGCAACCGCCTGAGCACACGCATCCTTCTC
ATCCAGAGGATTTTGGTGGGAAGCCTCGCCTCCCTAGTACCCTTTCTCTT
ACCATATCCAGAGTGACGGCCCTTCCTCTTGGCTTCCTTCATTCTGCGAG
CGCGAGAACGGGAGTGGATCTTTGTTGGCTTCCTGATGATGAAACCATCC
TTCACCAATTTCCTAATGTTCTGCCTGGAGTTGGCCATGGAGATTTCGTT
GACCTCATTAGGGTCAAGCCAGACCTTG
back to top