CF832196

Overview
NameCF832196
Unique NameCF832196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5486 contig Csv1_Contig5486:120..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_PYRFU (50S ribosomal protein L19e OS=Pyrococcus furiosus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.879e-19
Identity = 46/118 (38.98%), Postives = 71/118 (60.17%), Query Frame = -2
Query:  424 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVL 777
            ++W+DP  +++++ A +R++I++L+K+G I +KP K  SR RA+   E K+KGRH G G RKG + AR+  K              RK +  KKID+  Y  +Y++ KG  FKNK  L
Sbjct:   21 RIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQL 138          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_METJA (50S ribosomal protein L19e OS=Methanocaldococcus jannaschii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.658e-16
Identity = 40/115 (34.78%), Postives = 67/115 (58.26%), Query Frame = -2
Query:  433 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNK 777
            +VW+DP +++ + MA S+ +IR L+K+G I +K  K  S +R +++KE ++KGR  G G R+G   AR P K              ++ R+S KID+ +Y  +Y   KG  F+++
Sbjct:   23 RVWIDPTQLDRVKMAMSKDDIRALIKEGVIKKKQKKGISSARVKKLKEQRKKGRRRGPGSRRGAAGARTPPKERWMATIRALRKTLKQLRDSGKIDRKVYRKLYRMAKGGAFRSR 137          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_MAIZE (60S ribosomal protein L19 (Fragment) OS=Zea mays GN=RPL19 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.355e-15
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = -2
Query:  643 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARR 777
            KVWLDPNEV+EISMANSRQNIRKLVKDGFII+KP KIHSRSR ++
Sbjct:   18 KVWLDPNEVSEISMANSRQNIRKLVKDGFIIKKPHKIHSRSRCKK 62          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_METVA (50S ribosomal protein L19e OS=Methanococcus vannielii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.312e-15
Identity = 38/115 (33.04%), Postives = 66/115 (57.39%), Query Frame = -2
Query:  433 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNK 777
            +VW+DP  + ++ MA ++ +IR L+ DG I++K  K  S +R + ++E KRKG+  G G R+G + AR P K              ++ RE++KI++  Y  +Y   KG  F+++
Sbjct:   20 RVWVDPENLEKVKMAITKDDIRLLINDGIIVKKQEKGISSARKKEVQEQKRKGKRKGPGSRRGAKGARTPKKEKWMNTIRPLRTLLKELRENEKIERSSYRKLYRMAKGGAFRSR 134          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_METTH (50S ribosomal protein L19e OS=Methanobacterium thermoautotrophicum GN=rpl19e PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 39/115 (33.91%), Postives = 66/115 (57.39%), Query Frame = -2
Query:  433 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNK 777
            ++W+DP  ++E+S A +R  +++L+KDG I  KP K  S  R++++ + K+KGR  G G  KG + AR P K              ++ R++++I+K  Y  +Y   KG  FK+K
Sbjct:   20 RIWIDPERIDEVSRAITRDGVKQLIKDGAIKAKPKKGISSYRSKKIAQQKKKGRRRGPGSIKGAKGARRPKKDEWMTTIRALRKDLKEMRDNREINKSTYRKLYKMAKGGAFKSK 134          
BLAST of CF832196 vs. ExPASy Swiss-Prot
Match: RL19_ARCFU (50S ribosomal protein L19e OS=Archaeoglobus fulgidus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.147e-14
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  436 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKN 777
            +VW DP  + +I+ A ++Q+IR+L++ G I RKP    SR+R  + K  KRKGR  G+G RKG + AR+P K              R+ +    +D+  Y  +Y K KG  F++
Sbjct:   23 RVWFDPAALEDIATAATKQDIRELIEQGVIKRKPVNGVSRARINKRKLQKRKGRRRGHGSRKGAKGARMPRKRMWILRIRALRKALRQMKAEGVVDRRTYRILYRKAKGGEFRS 136          
The following BLAST results are available for this feature:
BLAST of CF832196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL19_PYRFU5.879e-1938.9850S ribosomal protein L19e OS=Pyrococcus furiosus ... [more]
RL19_METJA4.658e-1634.7850S ribosomal protein L19e OS=Methanocaldococcus j... [more]
RL19_MAIZE1.355e-1586.6760S ribosomal protein L19 (Fragment) OS=Zea mays G... [more]
RL19_METVA2.312e-1533.0450S ribosomal protein L19e OS=Methanococcus vannie... [more]
RL19_METTH3.019e-1533.9150S ribosomal protein L19e OS=Methanobacterium the... [more]
RL19_ARCFU1.147e-1435.9650S ribosomal protein L19e OS=Archaeoglobus fulgid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832196 ID=CF832196; Name=CF832196; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTAATGAACATAATACTCATCATTCAACCTCATTA
GAAACTACAAACGGTTCATATGGTTCCAAAATTCAAGGCTTTATAAGTAA
ATAATTTGCCATTAAACAGAAAACAAAATAACTTGGGAAACAAACTCCTA
CAAAGAAACCAGAACCAACATTAACATATATAAGTTATCAATCTTCAGTC
TCCATCATCGATGTATCAGCGATCACTTCTTAGCTTTCTTAGCTCCCTCA
GCTGGTTGGGGTGCTGGTACTGCCTTCTCTCCAGGTCCCTGTGCTAGTCG
CTCTTCTCTCCTGGCCAGCTTTCTCTCCCTGCTGGCCTTGTTCTTGGCGC
GCTTAGCCTCAAACTGGTCAGAAAGAGTCTTCTCTCTTGCCTTTTCAGCC
TTTGACTTGTGGATACTCTCCATGAGGACACGCTTGTTCTTAAATACATT
ACCCTTGACCTTCATGTACATGTCATGGTACATGTGCTTGTCAATTTTCT
TCGACTCACGGTATTTGCGGAGCAACCGCCTGAGCACACGCATCCTTCTC
ATCCAGAGGATTTTGGTGGGAAGCCTCGCCTCCCTAGTACCCTTTCTCTT
ACCATATCCAGAGTGACGGCCCTTCCTCTTGGCTTCCTTCATTCTGCGAG
CGCGAGAACGGGAGTGGATCTTTGTTGGCTTCCTGATGATGAAACCATCC
TTCACCAATTTCCTAATGTTCTGCCTGGAGTTGGCCATGGAGATTTCGTT
GACCTCATTAGGGTCAAGCCAGACCTTG
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