CF832198

Overview
NameCF832198
Unique NameCF832198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_PYRIL (50S ribosomal protein L14P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.071e-27
Identity = 65/144 (45.14%), Postives = 95/144 (65.97%), Query Frame = -2
Query:  313 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADNTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 732
            M+KRG   + G  +R  +  G+ + + V  ADN+GA+ + +I V G   +    R+P A VGDMV+  V++GKP+LRK++  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    WP IA+ A+ IV
Sbjct:    1 MAKRGGKRTVGVSYRFHVTPGIFLNSLVPVADNSGARLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIIV 144          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_PYRAR (50S ribosomal protein L14P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.944e-27
Identity = 64/144 (44.44%), Postives = 95/144 (65.97%), Query Frame = -2
Query:  313 MSKRGRGGSAG--NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 732
            M+KRG   + G   +F ++ G+ + + V  ADN+GAK + +I V G   +    R+P A VGDMV+  VK+GKP+LR+++   ++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    WP IA+ A+ +V
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVKEGKPELRRQIFRGIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_METBF (50S ribosomal protein L14P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.547e-26
Identity = 62/130 (47.69%), Postives = 89/130 (68.46%), Query Frame = -2
Query:  313 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 702
            G +  +   L   A V C DNTGAK + IISVK  +G  NR+P A +GDM + +VKKG P++RK+V+ AV+VRQ++ +RR DG+ + FEDNA VI + +G  KG+ I GPI +E A+ +P+I + A+ IV
Sbjct:    3 GIRSNIPRALNAGAKVPCVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLRVSFEDNAMVITDEEGIPKGTDIKGPIAREVAERYPKIGTTASIIV 132          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_METAC (50S ribosomal protein L14P OS=Methanosarcina acetivorans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.547e-26
Identity = 60/130 (46.15%), Postives = 89/130 (68.46%), Query Frame = -2
Query:  313 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 702
            G +  +   L   A + C DNTGAK + IISVK  +G  NR+P A +GDM + +VKKG P++RK+V+ AV+VRQ++ +RR DG+ + FEDNA VI + +G  KG+ I GP+ +E A+ +P+I + A+ IV
Sbjct:    3 GMRSNIPRALNAGAQIACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEEGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_METMA (50S ribosomal protein L14P OS=Methanosarcina mazei GN=rpl14p PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.501e-26
Identity = 59/130 (45.38%), Postives = 88/130 (67.69%), Query Frame = -2
Query:  313 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 702
            G +  +   L   A + C DNTGAK + IISVK  +G  NR+P A +GDM + +VKKG P++RK+++ AV+VRQ++ +RR DG+ + FEDNA VI +  G  KG+ I GP+ +E A+ +P+I + A+ IV
Sbjct:    3 GIRSNIPRALNAGAQIACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQILLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEDGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_HALMA (50S ribosomal protein L14P OS=Haloarcula marismortui GN=rpl14p PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.501e-26
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = -2
Query:  313 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 678
            GL   + + CADNTGA+ L +ISV G  G  NR P A +GD +  +V KG P++R++V+ AV+VRQRKP RR DG  + FEDNA VIV+   + +G+ + GPI +E A  +  +ASAA  IV
Sbjct:   11 GLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV 132          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_HALLT (50S ribosomal protein L14P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.501e-26
Identity = 60/128 (46.88%), Postives = 84/128 (65.62%), Query Frame = -2
Query:  313 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 696
            K  ++ GL   + + CADNTGA+ L +ISV G  G  NR P A +GD V  +V KG P++R++V+ AV+VRQRKP RR +G  + FEDNA VI++   E +G+ I GP+ +E A+ +  IAS A  IV
Sbjct:    5 KADVTQGLSKGSLITCADNTGARELKVISVAGYSGTKNRHPKAGIGDKVTVSVTKGTPEMRRQVLEAVVVRQRKPIRRPNGTRVKFEDNAAVIIDDLDEPRGTEIKGPVAREVAERFGSIASTATMIV 132          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_HALWD (50S ribosomal protein L14P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.879e-26
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = -2
Query:  313 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 696
            K  ++ GL   + V CADNTGA+ L +ISV G  G  NR P A +GD V  +V KG P++R++V+ AVIVRQRK  RR DG  + FEDNA VI++   E +G+ I GPI +E A+ +  IAS A  IV
Sbjct:    5 KADVTKGLERGSLVTCADNTGARELKVISVMGSSGTKNRHPKAGIGDQVTVSVTKGTPEMRRQVLEAVIVRQRKSIRRPDGTRVKFEDNAAVIIDEMEEPRGTEIKGPIAREVAERFGSIASTATMIV 132          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_NATPD (50S ribosomal protein L14P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.918e-25
Identity = 56/122 (45.90%), Postives = 80/122 (65.57%), Query Frame = -2
Query:  313 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 678
            GL   + + CADNTGA+ L + S+ G  G  NR P A +GD +  +V KG P++R++V+ AV++RQRKP RR DG  + FEDNA VIV+   + +G+ + GPI +E A+ +  IAS A  IV
Sbjct:   11 GLEKGSLITCADNTGARELKVTSISGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVIRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAERFGSIASTATIIV 132          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_NANEQ (50S ribosomal protein L14P OS=Nanoarchaeum equitans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.109e-24
Identity = 58/122 (47.54%), Postives = 81/122 (66.39%), Query Frame = -2
Query:  313 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNA-GVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 675
            LPV A +N ADN+GAK + +I+VKG KGR  RL  A + D+V+ +V+ GKPD+  ++  AV+VR +K WRR+DG  + FEDNA  ++ +  G  KG+ I  PI KE A+ WP +A  A  IV
Sbjct:   12 LPVGAYLNVADNSGAKVVKLIAVKGYKGRKRRLAKAGIADLVIVSVRDGKPDMIGQIFKAVVVRMKKEWRRRDGTRIKFEDNAVALLKDDYGTPKGTIIKTPIAKEVAERWPDLAKIARIIV 133          
The following BLAST results are available for this feature:
BLAST of CF832198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
RL14_PYRIL4.071e-2745.1450S ribosomal protein L14P OS=Pyrobaculum islandic... [more]
RL14_PYRAR6.944e-2744.4450S ribosomal protein L14P OS=Pyrobaculum arsenati... [more]
RL14_METBF1.547e-2647.6950S ribosomal protein L14P OS=Methanosarcina barke... [more]
RL14_METAC1.547e-2646.1550S ribosomal protein L14P OS=Methanosarcina aceti... [more]
RL14_METMA4.501e-2645.3850S ribosomal protein L14P OS=Methanosarcina mazei... [more]
RL14_HALMA4.501e-2648.3650S ribosomal protein L14P OS=Haloarcula marismort... [more]
RL14_HALLT4.501e-2646.8850S ribosomal protein L14P OS=Halorubrum lacusprof... [more]
RL14_HALWD5.879e-2649.2250S ribosomal protein L14P OS=Haloquadratum walsby... [more]
RL14_NATPD2.918e-2545.9050S ribosomal protein L14P OS=Natronomonas pharaon... [more]
RL14_NANEQ1.109e-2447.5450S ribosomal protein L14P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832198 ID=CF832198; Name=CF832198; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTAAAAAAAACCAACCAATTAGTAACCTTATTTAT
AAAAACAAAACTTTAAAACGTTTAAAACAAAATCAATATTTCCTCTTAAA
AGAACAAAATTCTTTGGAAATTAAACACAAATTAAATTCATTCTACAATT
AGAATAGGTAGAAAATCTGAAATCTCCTTGTATCTGTCTAGCAATAGCCA
ATAGAGGAACAACCACAACACTCATCAGTAGGAAATGATCCCAATGATAT
TAACAGACCCTACGGTCACCTACCAAACTAAGGCCAAAAAAATCCCTTAA
AACCCCCACTCAAACAATAGCATTGGCAGCACTTGCAATTCTTGGCCACA
GATCAGCACACTCCTTACCAATTGGTCCAGTTATGGCAGATCCTTTCATT
TCCCCCTTAGGGTTGACGATGACACCAGCATTATCTTCAAAGTACATGAA
GACGCCGTCCTTTCGGCGCCAGGGCTTGCGCTGGCGGACGATGACAGCTG
GCATGACCTTTTTCCTCAGATCGGGCTTTCCTTTCTTGACAGTGGCCATG
ACCATGTCGCCGACGCAGGCCGACGGAAGTCGGTTGAGTCTCCCTTTGAT
TCCTTTCACCGATATTATGTAGAGATTCTTCGCACCCGTGTTGTCGGCAC
AGTTCACCGTCGCCGCCACCGGCAGACCCAGCGACATCCTGAACTTGTTC
CCCGCCGACCCTCCCCTTCCTCGCTTCGACATT
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