CF832198

Overview
NameCF832198
Unique NameCF832198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_METB6 (50S ribosomal protein L14P OS=Methanoregula boonei (strain 6A8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.891e-24
Identity = 55/121 (45.45%), Postives = 80/121 (66.12%), Query Frame = -2
Query:  313 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 675
            L     + CADNTGA+ + I+SV G  G   R P   +GD+   TVKKG PD+RKK++ AV++RQ+K  RR +G+ + F+DNA V+V+ K E KG+ I GP+ +E A+ +P++ S A  IV
Sbjct:   12 LATGTKLTCADNTGARIVQIVSVFGYHGVRRRQPKMGLGDIATVTVKKGTPDMRKKLVRAVVIRQKKEMRRPNGLRVSFDDNAVVVVDEKNEPKGTEIKGPVAREVAERYPKLGSMATIIV 132          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_METLZ (50S ribosomal protein L14P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.386e-24
Identity = 51/121 (42.15%), Postives = 83/121 (68.60%), Query Frame = -2
Query:  313 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 675
            L   + + CADNTGA+ + I+SV G  G  NR P   +GD+   TVKKG PD+++K++ AV+VRQ+K +RR +G+ + FE+NA +++N  G+ +G+ I GP+ +E A+ +P++ S A  I+
Sbjct:   12 LQTGSKMVCADNTGARVVQIVSVFGYHGVKNRQPKMGLGDLATVTVKKGTPDMKRKLVRAVVVRQKKEFRRPNGLRVSFEENAMILLNENGDPRGTDIKGPVAREVAERFPKVGSMATIII 132          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_UNCMA (50S ribosomal protein L14P OS=Uncultured methanogenic archaeon RC-I GN=rpl14p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.567e-23
Identity = 52/128 (40.62%), Postives = 84/128 (65.62%), Query Frame = -2
Query:  313 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 696
            K ++   +  A  +  ADNTGA+ + +ISV   +GR NR+P A +GD+ + +VKKG P++RK ++  V++RQ+K +RR  G+ + FEDNA V+V+   + KG+ I GP+ +E A+ + +I S A  IV
Sbjct:    5 KAKIPRSVHTATRLEVADNTGARLVEVISVLKYRGRKNRMPKAGIGDIFIGSVKKGTPEMRKTIVRCVVIRQKKEYRRPSGLRVSFEDNACVLVDDNNDPKGTEIKGPVAREVAERYAKIGSTATIIV 132          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_METMJ (50S ribosomal protein L14P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 52/121 (42.98%), Postives = 80/121 (66.12%), Query Frame = -2
Query:  313 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 675
            L   + + C+DNTGA+ + ++SV    G   R P   +GD+   +VKKG PD+R+K+  AV++RQ+K  RR +G+ + FEDNA V++N +GE KG+ I G + +E A+ +P+IAS A  IV
Sbjct:   12 LATGSRMVCSDNTGARLVEVVSVDRYHGVRRRQPCLGLGDVATVSVKKGTPDMRRKLEKAVVIRQKKEIRRPNGIRLSFEDNAMVLINERGEPKGTEIKGAVPREIAERFPKIASMATTIV 132          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_METHJ (50S ribosomal protein L14P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.312e-22
Identity = 52/115 (45.22%), Postives = 76/115 (66.09%), Query Frame = -2
Query:  313 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 657
            + CADNTGA+ + ++SV G  G   R P   + D+   +VKKG PD+R+K++ AV++RQ+K  RR  G+ + FEDNA V+V+ K E +G+ I GP+ +E A  +PRI S A  IV
Sbjct:   18 LTCADNTGARVVQVVSVFGYHGVRRRQPKLGLADIATVSVKKGTPDMRRKLVRAVVIRQKKEIRRPSGLRLSFEDNAVVVVDDKNEPRGTEIKGPVAREVAIRYPRIGSMATIIV 132          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_DEHE1 (50S ribosomal protein L14 OS=Dehalococcoides ethenogenes (strain 195) GN=rplN PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.509e-17
Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = -2
Query:  352 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 657
            +N ADNTGAK +  I+V G   +L     A VGD+++A VKK  PD + K   V+ AV+VR  KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E  D
Sbjct:    8 LNVADNTGAKKIMCINVLGGSRKLQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_DEHSC (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain CBDB1) GN=rplN PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.451e-16
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = -2
Query:  352 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 657
            +N ADNTGAK +  I+V G   ++     A VGD+++A VKK  PD + K   V+ AV+VR  KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E  D
Sbjct:    8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_DEHSB (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain BAV1) GN=rplN PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.451e-16
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = -2
Query:  352 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 657
            +N ADNTGAK +  I+V G   ++     A VGD+++A VKK  PD + K   V+ AV+VR  KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E  D
Sbjct:    8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_THERP (50S ribosomal protein L14 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplN PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = -2
Query:  325 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAA 648
            ADNTGAK +  I V G  G  +R  +  VGD+++A+VKK +P+   K   V+ AVIVR +K +RRKDG ++ F+DNA V+V P+G+ +G+ I GP+ +E  +  + RI S A
Sbjct:   11 ADNTGAKEIMCIRVLG--GSKHRYGT--VGDLIVASVKKAEPNAAVKKGDVVYAVIVRTKKEYRRKDGSYIKFDDNAAVLVTPQGQPRGTRIFGPVARELREKHYMRIISLA 118          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_SACEN (50S ribosomal protein L14 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  352 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 648
            ADN+GAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVRQ+K  RR DG ++ F++NA V++ P GE +G+ I GP+G+E  D
Sbjct:   11 ADNSGAKEILTIRVLGGSGRRY----AGIGDIIVATVKDAIPGANVKKGEVVKAVIVRQKKEKRRADGSYIRFDENAAVLIKPSGEPRGTRIFGPVGRELRD 108          
The following BLAST results are available for this feature:
BLAST of CF832198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
RL14_METB61.891e-2445.4550S ribosomal protein L14P OS=Methanoregula boonei... [more]
RL14_METLZ9.386e-2442.1550S ribosomal protein L14P OS=Methanocorpusculum l... [more]
RL14_UNCMA3.567e-2340.6350S ribosomal protein L14P OS=Uncultured methanoge... [more]
RL14_METMJ1.770e-2242.9850S ribosomal protein L14P OS=Methanoculleus maris... [more]
RL14_METHJ2.312e-2245.2250S ribosomal protein L14P OS=Methanospirillum hun... [more]
RL14_DEHE18.509e-1746.6750S ribosomal protein L14 OS=Dehalococcoides ethen... [more]
RL14_DEHSC1.451e-1645.7150S ribosomal protein L14 OS=Dehalococcoides sp. (... [more]
RL14_DEHSB1.451e-1645.7150S ribosomal protein L14 OS=Dehalococcoides sp. (... [more]
RL14_THERP1.605e-1544.6450S ribosomal protein L14 OS=Thermomicrobium roseu... [more]
RL14_SACEN2.737e-1545.1050S ribosomal protein L14 OS=Saccharopolyspora ery... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01H16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832198 ID=CF832198; Name=CF832198; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTAAAAAAAACCAACCAATTAGTAACCTTATTTAT
AAAAACAAAACTTTAAAACGTTTAAAACAAAATCAATATTTCCTCTTAAA
AGAACAAAATTCTTTGGAAATTAAACACAAATTAAATTCATTCTACAATT
AGAATAGGTAGAAAATCTGAAATCTCCTTGTATCTGTCTAGCAATAGCCA
ATAGAGGAACAACCACAACACTCATCAGTAGGAAATGATCCCAATGATAT
TAACAGACCCTACGGTCACCTACCAAACTAAGGCCAAAAAAATCCCTTAA
AACCCCCACTCAAACAATAGCATTGGCAGCACTTGCAATTCTTGGCCACA
GATCAGCACACTCCTTACCAATTGGTCCAGTTATGGCAGATCCTTTCATT
TCCCCCTTAGGGTTGACGATGACACCAGCATTATCTTCAAAGTACATGAA
GACGCCGTCCTTTCGGCGCCAGGGCTTGCGCTGGCGGACGATGACAGCTG
GCATGACCTTTTTCCTCAGATCGGGCTTTCCTTTCTTGACAGTGGCCATG
ACCATGTCGCCGACGCAGGCCGACGGAAGTCGGTTGAGTCTCCCTTTGAT
TCCTTTCACCGATATTATGTAGAGATTCTTCGCACCCGTGTTGTCGGCAC
AGTTCACCGTCGCCGCCACCGGCAGACCCAGCGACATCCTGAACTTGTTC
CCCGCCGACCCTCCCCTTCCTCGCTTCGACATT
back to top