CF832204 | Citrus Genome Database

Overview


Name	CF832204
Unique Name	CF832204
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	346

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7580	contig	Csv1_Contig7580:240..584.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF832204 vs. ExPASy Swiss-Prot
Match: 1433A_SOYBN (14-3-3-like protein A OS=Glycine max GN=GF14A PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.599e-40
Identity = 82/100 (82.00%), Postives = 91/100 (91.00%), Query Frame = 1

Query:   46 HKNVIGAMRASWRIISSIEQKEESRGTEYHVSGIRDYRSKIDNDLSKICDGILSLLESHLIPSASSAESKVFYLNMSGDYHRYLAEFKTGAERKEAAEST 345
            +KNVIGA RASWRIISSIEQKEESRG E HV+ I++YR KI+ +LSKICDGIL+LLES+LIPSA+S ESKVFYL M GDYHRYLAEFKTGAERKEAAEST
Sbjct:   53 YKNVIGARRASWRIISSIEQKEESRGNEDHVAIIKEYRGKIEAELSKICDGILNLLESNLIPSAASPESKVFYLKMKGDYHRYLAEFKTGAERKEAAEST 152

[Close]

BLAST of CF832204 vs. ExPASy Swiss-Prot
Match: 14336_ORYSJ (14-3-3-like protein GF14-F OS=Oryza sativa subsp. japonica GN=GF14F PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 3.395e-40
Identity = 78/100 (78.00%), Postives = 92/100 (92.00%), Query Frame = 1

Query:   46 HKNVIGAMRASWRIISSIEQKEESRGTEYHVSGIRDYRSKIDNDLSKICDGILSLLESHLIPSASSAESKVFYLNMSGDYHRYLAEFKTGAERKEAAEST 345
            +KNVIGA RASWRIISSIEQKEESRG E +V+ I++YRS+I+ +LSKICDGIL LL+SHL+PSA++AESKVFYL M GDYHRYLAEFK+GAERKEAAE+T
Sbjct:   55 YKNVIGARRASWRIISSIEQKEESRGNEAYVASIKEYRSRIETELSKICDGILKLLDSHLVPSATAAESKVFYLKMKGDYHRYLAEFKSGAERKEAAENT 154

[Close]

BLAST of CF832204 vs. ExPASy Swiss-Prot
Match: 14333_ORYSJ (14-3-3-like protein GF14-C OS=Oryza sativa subsp. japonica GN=GF14C PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.791e-40
Identity = 78/100 (78.00%), Postives = 90/100 (90.00%), Query Frame = 1

Query:   46 HKNVIGAMRASWRIISSIEQKEESRGTEYHVSGIRDYRSKIDNDLSKICDGILSLLESHLIPSASSAESKVFYLNMSGDYHRYLAEFKTGAERKEAAEST 345
            +KNVIGA RASWRI+SSIEQKEE RG E HV+ I++YR KI+ +LSKICDGIL LL+SHL+PS+++AESKVFYL M GDYHRYLAEFKTGAERKEAAEST
Sbjct:   50 YKNVIGARRASWRIVSSIEQKEEGRGNEEHVTLIKEYRGKIEAELSKICDGILKLLDSHLVPSSTAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAEST 149

[Close]

BLAST of CF832204 vs. ExPASy Swiss-Prot
Match: 1433_OENEH (14-3-3-like protein OS=Oenothera elata subsp. hookeri PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.563e-40
Identity = 81/100 (81.00%), Postives = 88/100 (88.00%), Query Frame = 1

Query:   46 HKNVIGAMRASWRIISSIEQKEESRGTEYHVSGIRDYRSKIDNDLSKICDGILSLLESHLIPSASSAESKVFYLNMSGDYHRYLAEFKTGAERKEAAEST 345
            +KNVIGA RASWRIISSIEQKEESRG + HVS IRDYRSKI+ +LS IC GIL LL+S LIPSA+S +SKVFYL M GDYHRYLAEFKTGAERKEAAEST
Sbjct:   55 YKNVIGARRASWRIISSIEQKEESRGNDDHVSTIRDYRSKIETELSNICGGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAEST 154

[Close]

BLAST of CF832204 vs. ExPASy Swiss-Prot
Match: 1433_LILLO (14-3-3-like protein OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.563e-40
Identity = 79/100 (79.00%), Postives = 90/100 (90.00%), Query Frame = 1

Query:   46 HKNVIGAMRASWRIISSIEQKEESRGTEYHVSGIRDYRSKIDNDLSKICDGILSLLESHLIPSASSAESKVFYLNMSGDYHRYLAEFKTGAERKEAAEST 345
            +KNVIGA RASWRIISSIEQKEESRG E HV+ I+DYR KI+ +LSKICDGIL LL+SHL+PS+++ ESKVFYL M GDYHRYLAEFK+GAERKEAAEST
Sbjct:   55 YKNVIGARRASWRIISSIEQKEESRGNEDHVALIKDYRGKIEAELSKICDGILKLLDSHLVPSSTAPESKVFYLKMKGDYHRYLAEFKSGAERKEAAEST 154

[Close]

BLAST of CF832204 vs. ExPASy Swiss-Prot
Match: 14332_SOLLC (14-3-3 protein 2 OS=Solanum lycopersicum GN=TFT2 PE=3 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.563e-40
Identity = 80/100 (80.00%), Postives = 90/100 (90.00%), Query Frame = 1

Query:   46 HKNVIGAMRASWRIISSIEQKEESRGTEYHVSGIRDYRSKIDNDLSKICDGILSLLESHLIPSASSAESKVFYLNMSGDYHRYLAEFKTGAERKEAAEST 345
            +KNVIGA RASWRIISSIEQKEESRG E HV  I++YRSKI+++LS ICDGIL LL+S+LIPSAS+ +SKVFYL M GDYHRYLAEFKTGAERKEAAEST
Sbjct:   50 YKNVIGARRASWRIISSIEQKEESRGNEEHVKCIKEYRSKIESELSDICDGILKLLDSNLIPSASNGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAEST 149

[Close]

BLAST of CF832204 vs. ExPASy Swiss-Prot
Match: 1433A_HORVU (14-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.877e-40
Identity = 77/100 (77.00%), Postives = 91/100 (91.00%), Query Frame = 1

Query:   46 HKNVIGAMRASWRIISSIEQKEESRGTEYHVSGIRDYRSKIDNDLSKICDGILSLLESHLIPSASSAESKVFYLNMSGDYHRYLAEFKTGAERKEAAEST 345
            +KNVIGA RASWRIISSIEQKEESRG E +V+ I++YR++I+ +LSKICDGIL LL+SHL+PSA++AESKVFYL M GDYHRYLAEFK GAERKEAAE+T
Sbjct:   55 YKNVIGARRASWRIISSIEQKEESRGNEAYVASIKEYRTRIETELSKICDGILKLLDSHLVPSATAAESKVFYLKMKGDYHRYLAEFKAGAERKEAAENT 154

[Close]

BLAST of CF832204 vs. ExPASy Swiss-Prot
Match: 1433B_TOBAC (14-3-3-like protein B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.874e-39
Identity = 80/100 (80.00%), Postives = 89/100 (89.00%), Query Frame = 1

Query:   46 HKNVIGAMRASWRIISSIEQKEESRGTEYHVSGIRDYRSKIDNDLSKICDGILSLLESHLIPSASSAESKVFYLNMSGDYHRYLAEFKTGAERKEAAEST 345
            +KNVIGA RASWRIISSIEQKEESRG E HV  I++YRSKI+++LS ICDGIL LL+S LIPSAS+ +SKVFYL M GDYHRYLAEFKTGAERKEAAEST
Sbjct:   51 YKNVIGARRASWRIISSIEQKEESRGNEDHVKCIQEYRSKIESELSNICDGILKLLDSCLIPSASAGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAEST 150

[Close]

BLAST of CF832204 vs. ExPASy Swiss-Prot
Match: 1433_SPIOL (14-3-3-like protein (Fragment) OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.426e-38
Identity = 77/100 (77.00%), Postives = 88/100 (88.00%), Query Frame = 1

Query:   46 HKNVIGAMRASWRIISSIEQKEESRGTEYHVSGIRDYRSKIDNDLSKICDGILSLLESHLIPSASSAESKVFYLNMSGDYHRYLAEFKTGAERKEAAEST 345
            +KNV+GA RASWRIISSIEQKEESRG E HVS IRDYRS+I+ +LS  CDGIL LL++ L+P+ASS +SKVFYL M GDYHRYLAEFKTGA+RKEAAEST
Sbjct:    8 YKNVVGARRASWRIISSIEQKEESRGNEDHVSVIRDYRSRIEKELSDNCDGILKLLDTKLVPAASSGDSKVFYLKMKGDYHRYLAEFKTGAQRKEAAEST 107

[Close]

BLAST of CF832204 vs. ExPASy Swiss-Prot
Match: 1433A_VICFA (14-3-3-like protein A OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.426e-38
Identity = 78/100 (78.00%), Postives = 88/100 (88.00%), Query Frame = 1

Query:   46 HKNVIGAMRASWRIISSIEQKEESRGTEYHVSGIRDYRSKIDNDLSKICDGILSLLESHLIPSASSAESKVFYLNMSGDYHRYLAEFKTGAERKEAAEST 345
            +KNVIGA RASWRIISSIEQKEESRG + HVS IRDYRSKI+ +LS IC+GIL LL+S LIPSA+  +SKVFYL M GDYHRYLAEFK+GAERK+AAEST
Sbjct:   55 YKNVIGARRASWRIISSIEQKEESRGNDEHVSVIRDYRSKIETELSNICNGILKLLDSRLIPSAALGDSKVFYLKMKGDYHRYLAEFKSGAERKDAAEST 154

The following BLAST results are available for this feature:

BLAST of CF832204 vs. ExPASy Swiss-Prot

BLAST of CF832204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139


Match Name	E-value	Identity	Description
1433A_SOYBN	2.599e-40	82.00	14-3-3-like protein A OS=Glycine max GN=GF14A PE=2...	[more]
14336_ORYSJ	3.395e-40	78.00	14-3-3-like protein GF14-F OS=Oryza sativa subsp. ...	[more]
14333_ORYSJ	5.791e-40	78.00	14-3-3-like protein GF14-C OS=Oryza sativa subsp. ...	[more]
1433_OENEH	7.563e-40	81.00	14-3-3-like protein OS=Oenothera elata subsp. hook...	[more]
1433_LILLO	7.563e-40	79.00	14-3-3-like protein OS=Lilium longiflorum PE=2 SV=...	[more]
14332_SOLLC	7.563e-40	80.00	14-3-3 protein 2 OS=Solanum lycopersicum GN=TFT2 P...	[more]
1433A_HORVU	9.877e-40	77.00	14-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1	[more]
1433B_TOBAC	2.874e-39	80.00	14-3-3-like protein B OS=Nicotiana tabacum PE=2 SV...	[more]
1433_SPIOL	1.426e-38	77.00	14-3-3-like protein (Fragment) OS=Spinacia olerace...	[more]
1433A_VICFA	1.426e-38	78.00	14-3-3-like protein A OS=Vicia faba PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS02_01H19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H19, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF832204 ID=CF832204; Name=CF832204; organism=Citrus sinensis; type=EST; length=346bp
GTTCCTTTGCTACCGTGGAGGAAAGGAACCTTCTCTCACTTGCTTCACAA
GAATGTGATTGGGGCCATGAGGGCTTCATGGAGGATCATCTCTTCCATTG
AGCAGAAGGAGGAGAGCCGGGGAACTGAATACCATGTCTCAGGAATTAGG
GACTACAGGAGCAAAATTGACAATGACCTCAGCAAGATCTGTGATGGGAT
TCTTAGCCTCCTTGAGTCTCATCTCATTCCCTCTGCCTCATCGGCTGAGT
CTAAGGTGTTCTACCTGAATATGAGCGGTGATTACCACAGGTATCTGGCT
GAGTTCAAGACTGGAGCTGAGAGGAAGGAAGCTGCGGAGAGCACTT