CF832212

Overview
NameCF832212
Unique NameCF832212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1050 contig Csv1_Contig1050:235..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC2_ARATH (Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.293e-19
Identity = 69/187 (36.90%), Postives = 95/187 (50.80%), Query Frame = -2
Query:  147 TKWA--INNVSLNLP-PTPYLGSIKYGL-KDAFDQNGP-----PENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 677
            TK+A  INNVS  LP  T  L S   G  K+ F  + P     P N++       PP N   + G+ V +L   TTV+++LQ  + +     E HP HLHG +F+V+G+G G F    +              +  P G W A+RF+ADNPG W  HCHIE   H+  G+ +A  V   G++PNQ L
Sbjct:  388 TKFAASINNVSFILPNKTSLLQSYFVGKSKNVFMTDFPTAPIIPFNYTGT-----PPNNTMVSRGTKVVVLKYKTTVELVLQGTSILG---IEAHPIHLHGFNFYVVGQGFGNFNPARDPKHYNLVDPVERNTINIPSGGWVAIRFLADNPGVWLMHCHIE--IHLSWGLTMA-WVVLDGDLPNQKL 563          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC10_ORYSJ (Laccase-10 OS=Oryza sativa subsp. japonica GN=LAC10 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.617e-19
Identity = 59/176 (33.52%), Postives = 85/176 (48.30%), Query Frame = -2
Query:  147 AINNVSLNLPPTPYLGSIKYGLK-DAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 668
            +INNVS ++P T  L +   G     +  + P            PP N N + G+ V +L  N +V+V+LQ+ + +    +E+HP HLHG DF+V+G+G G +                   V  P G W A+RF ADNPG W  HCH+E H   G+ +     V   G +P Q L
Sbjct:  399 SINNVSFDMPTTALLQAHYTGQSAGVYTADFPASPLEPFNYTGTPPNNTNVSNGTRVVVLPYNASVEVVLQDTSILG---AESHPLHLHGFDFFVVGQGTGNYDPSKHPAEFNLVDPVQRNTVGVPAGGWVAIRFFADNPGVWFMHCHLEVHTTWGLKMA---WVVNDGPLPEQKL 568          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC11_ARATH (Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.580e-19
Identity = 54/159 (33.96%), Postives = 85/159 (53.46%), Query Frame = -2
Query:  204 AINNVSLNLPPTPYLGSIKYGLKDAFDQN---GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGM 668
            +INN++  +P T  L +    +   F  +    PP+ F+  Y  +    N  T+ G+ +  +  NTT++++LQ+ N +     E+HP+HLHG++F+V+G G G F  K+D            NT  +   GW A+RF ADNPG W  HCH+E H   G+
Sbjct:  378 SINNITFIMPKTALLKAHYSNISGVFRTDFPDRPPKAFN--YTGVPLTANLGTSTGTRLSRVKFNTTIELVLQDTNLLTV---ESHPFHLHGYNFFVVGTGVGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFRADNPGVWFMHCHLEVHTMWGL 531          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC14_ARATH (Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.251e-18
Identity = 57/162 (35.19%), Postives = 81/162 (50.00%), Query Frame = -2
Query:  195 AINNVSLNLPPTPYLGSIKYGLKDAFDQN---GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 668
            +INN+S   P    L +    +   F ++    PP  F+   + +  P    T  G+ V +L  N++V++ILQ       N+   HP HLHG++F+V+G G G F +  +            T V  P  GWTA+RFVA+NPG W  HCHIE H   GM  V
Sbjct:  392 SINNISFVNPSVDILRAYYRHIGGVFQEDFPRNPPTKFNYTGENLPFP----TRFGTKVVVLDYNSSVELILQGTTVWASNI---HPIHLHGYNFYVVGSGFGNFDRRKDPLRYNLVDPPEETTVGVPRNGWTAVRFVANNPGVWLLHCHIERHATWGMNTV 546          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC12_ARATH (Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.251e-18
Identity = 59/170 (34.71%), Postives = 83/170 (48.82%), Query Frame = -2
Query:  198 AINNVSLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTT------------LGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGV 668
            ++NNVS  LP         + L  A   NG P  F+ ++   KPPV  + T             G+ +Y L   + V V+LQ+ N +    SE HP HLHG+DF+++G G G F  K+D            NT  +   GW  +RFVADNPG W  HCH++ H   G+ +
Sbjct:  384 SMNNVSFVLPSN-------FSLLQAHS-NGIPGVFTTDFP-SKPPVKFDYTGNNISRALFQPVKGTKLYKLKYGSRVQVVLQDTNIVT---SENHPIHLHGYDFYIVGEGFGNFNPKKDTSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGVWLMHCHLDVHIKWGLAM 541          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC4_ARATH (Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.134e-18
Identity = 60/178 (33.71%), Postives = 84/178 (47.19%), Query Frame = -2
Query:  147 AINNVSLNLPPTPYLGSIKYGLKDAFDQN---GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 668
            +INNV+  +P T  L +  +     F  +    PP  F+     +    N  T  G+ +Y L  N TV ++LQ+   I P   E HP HLHG +F+ +GRG G F    +              +  P G W  +RF ADNPG W  HCH+E   H   G+ +A  VE  G  PNQ++
Sbjct:  380 SINNVTFIMPKTALLPAHYFNTSGVFTTDFPKNPPHVFNYSGGSV---TNMATETGTRLYKLPYNATVQLVLQDTGVIAP---ENHPVHLHGFNFFEVGRGLGNFNSTKDPKNFNLVDPVERNTIGVPSGGWVVIRFRADNPGVWFMHCHLE--VHTTWGLKMAFLVEN-GKGPNQSI 548          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC4_ORYSJ (Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 58/176 (32.95%), Postives = 88/176 (50.00%), Query Frame = -2
Query:  147 AINNVSLNLPPTPYLGSIKYGLKDA-FDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 668
            ++NNVS  LP    L S   GL    +  + P    S       PP N N   G+ + +L  NT+V++++Q+ + +     E+HP HLHG +F+V+G+G G +   ++              V  P G W A+RF+ADNPG W  HCH+E H   G+ +   +     G+ PNQ L
Sbjct:  400 SMNNVSFVLPARALLQSHFTGLSSGVYAPDFPVAPLSPFNYTGTPPNNTNVKTGTKLLVLRYNTSVELVMQDTSILG---IESHPLHLHGFNFFVIGQGFGNYDAVNDPAKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV---LDGSHPNQKL 569          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC13_ARATH (Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 58/170 (34.12%), Postives = 82/170 (48.24%), Query Frame = -2
Query:  195 AINNVSLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNAN-----------TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKE-DEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 668
            +INNVS   P        +  +  A+ Q  P   F+ ++    PPV  +            T G+  Y L  N+ V +ILQ+ + +    +E HP HLHG++F+V+G G G F    D            NT    P GW A+RFVA+NPGAW  HCHI+ H   G+ +V
Sbjct:  388 SINNVSFVFPK-------QNSIMQAYYQGTPTGVFTTDFPPT-PPVTFDYTGNVSRGLWQPTRGTKAYKLKFNSQVQIILQDTSIVT---TENHPMHLHGYEFYVVGTGVGNFNPNTDTSSFNLIDPPRRNTIGTPPGGWVAIRFVANNPGAWLMHCHIDSHIFWGLAMV 546          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC5_ARATH (Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.059e-17
Identity = 59/177 (33.33%), Postives = 85/177 (48.02%), Query Frame = -2
Query:  177 AINNVSLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTT------------LGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 668
            ++NNVS  LP         Y L  A   +G P  F+ ++   KPPV  + T             G+ +Y L   + V ++LQ+   + P   E HP HLHG+DF+++  G G F  K+D            NT  +   GW  +RF+ADNPG W  HCH++   HI  G+ +A  VE
Sbjct:  399 SMNNVSFALPSN-------YSLLQAH-HHGIPGVFTTDFPA-KPPVKFDYTGNNISRSLYQPDRGTKLYKLKYGSRVQIVLQDTGIVTP---ENHPIHLHGYDFYIIAEGFGNFNPKKDTAKFNLEDPPLRNTVGVPVNGWAVIRFIADNPGVWIMHCHLDA--HISWGLAMAFLVE 561          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC14_ORYSJ (Laccase-14 OS=Oryza sativa subsp. japonica GN=LAC14 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.059e-17
Identity = 59/175 (33.71%), Postives = 84/175 (48.00%), Query Frame = -2
Query:  198 NTINGFTKWAINNVSLNLPPTPYL----GSIKYGLKDAFDQNGPPE--NFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF---TKEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGV 695
            N   G    ++NNVS  LP T  L     S   G+      + PP   +F+N   V +      T+ G+ V  L  N TV+V+LQN   +    +E HP HLHG +F+VL +G G +    ++ +           NT  + P GW  +RF ADNPG W  HCH+E H   G+ +
Sbjct:  388 NRTRGSLAASMNNVSFQLPATMSLLEASRSRSSGVYTRDFPDRPPVMFDFTNAAAVNRNMSLMVTSKGTRVKALRYNETVEVVLQNTAVLG---TENHPLHLHGFNFYVLAQGTGNYYYLIRKKKIRKNLVNPQQRNTIAVPPGGWAVIRFTADNPGVWLMHCHLEAHLPFGLAM 559          
The following BLAST results are available for this feature:
BLAST of CF832212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
LAC2_ARATH3.293e-1936.90Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=... [more]
LAC10_ORYSJ5.617e-1933.52Laccase-10 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC11_ARATH9.580e-1933.96Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 S... [more]
LAC14_ARATH1.251e-1835.19Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 S... [more]
LAC12_ARATH1.251e-1834.71Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 S... [more]
LAC4_ARATH2.134e-1833.71Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV... [more]
LAC4_ORYSJ3.641e-1832.95Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 ... [more]
LAC13_ARATH4.755e-1834.12Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 S... [more]
LAC5_ARATH1.059e-1733.33Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=... [more]
LAC14_ORYSJ1.059e-1733.71Laccase-14 OS=Oryza sativa subsp. japonica GN=LAC1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832212 ID=CF832212; Name=CF832212; organism=Citrus sinensis; type=EST; length=756bp
TTTTTTTTTTTTTATTCACTCCGAAATTTTATTAATATTAATACCTTTAC
AACAATAGAAACTCCAGGAATAAAGTACATAAAACCCTCTAGCTAGCCTC
AATTTTGTTTAGGGTTCATGAACCTTTTCCCAGTCAAACCACAAGCCAAC
GCCTGGTTTGGAATATTACCAACGGTTTCAACACCAAGAGCAAGAACCAC
ACCCATTCCAATATGGAAATGGGGCTCAATATGGCAGTGAAATGCCCAAG
CACCTGGATTATCAGCAACAAATCTTAAAGCAGTCCAGCCATATGGGAAT
ATCACCGCAGTATTTTTCAATGGTGGATTCTTCAAGTTAAATTTCTTCTC
ATCTTCTTTCGTAAACTTCCCTTCTCCGCGCCCTAATACCCAAAAATCAT
GCCCATGCAAATGCCAAGGGTGGGTTTCACTCAAGTTTGGCCTTATCGCG
TTTGCATTTTGAAGTATAACATCAACTGTGGTGTTTAAACCAAGCATGTA
AACCCCACTTCCAAGAGTTGTATTAGCGTTTACAGGAGGTTTCATCACGT
CATACTCATTCGAGAAGTTTTCGGGGGGACCATTCTGATCAAAAGCATCT
TTAAGACCATATTTGATGGATCCTAAGTAAGGAGTGGGGGGTAAATTCAG
GGACACATTGTTAATAGCCCACTTAGTGAACCCGTTAATGGTGTTTTGAG
TGTTAAGAAGGGTGAGCCGACGGTGGAAATTTGTGGGAGGCTTGGGGGAT
CCCATT
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