CF832213

Overview
NameCF832213
Unique NameCF832213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1050 contig Csv1_Contig1050:64..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832213 vs. ExPASy Swiss-Prot
Match: LAC7_ORYSJ (Laccase-7 OS=Oryza sativa subsp. japonica GN=LAC7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 59/221 (26.70%), Postives = 93/221 (42.08%), Query Frame = 2
Query:   47 ALTLLNYHPTSASKMPLSPPPITPIWDDYDHSKSFSNKIFALMGSPKP-----PTNFHRRLTLL---------NTQNTINGFT-KWAINNVTLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILHNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVA 664
            A  +++Y+ TS  K   +  P+ P       S + +   F L G P P     PT     +T+          +TQ++ +G +   A+N V+  LP    L   ++        N  P  ++ ++     P       G+ V  L  N+TV+++L N  A     SE HP HLHG +F+VL +G G FT  +             T  +   GW  +RFVA
Sbjct:  307 ATAIVHYNTTSTKK---NATPVMPTMPQSSDSATANAFYFGLRGPPSPSAPAVPTKVDVNMTIELGLGQLPCDSTQSSCSGKSVAAAMNGVSFRLPSQMSLLEAQF--------NRTPGVYTADFPDAPQPSGTPMVEGTKVRRLKYNSTVEIVLQNPTAFP---SENHPIHLHGFNFFVLAQGLGNFTPGNVSGYNLVDPVSRNTLAVPTGGWAVIRFVA 513          
BLAST of CF832213 vs. ExPASy Swiss-Prot
Match: LAC11_ARATH (Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 60/217 (27.65%), Postives = 100/217 (46.08%), Query Frame = 2
Query:   56 LLNYHPTSASKMPLSPPPITPIWDDYDHSKSFSNKIFALMGSPKP---PTNFHRRLTL-----LNTQNT-INGFTKWA-INNVTLNLPPTPYLGSIKYGLKDAFDQN---GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILHNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF-TKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVA 664
            +L Y     + +P+ P    P+ +D   +  ++ K+ +L     P   P    RRL       +N   T +NG    A INN+T  +P T  L +    +   F  +    PP+ F+  Y  +    N  T+ G+ +  +  NTT++++L + N +     E+HP+HLHG++F+V+G G G F  K+D             T  +   GW A+RF A
Sbjct:  302 ILQYKGVPNTVLPILPK--LPLPNDTSFALDYNGKLKSLNTPNFPALVPLKVDRRLFYTIGLGINACPTCVNGTNLAASINNITFIMPKTALLKAHYSNISGVFRTDFPDRPPKAFN--YTGVPLTANLGTSTGTRLSRVKFNTTIELVLQDTNLLTV---ESHPFHLHGYNFFVVGTGVGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFRA 511          
The following BLAST results are available for this feature:
BLAST of CF832213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
LAC7_ORYSJ2.613e-1126.70Laccase-7 OS=Oryza sativa subsp. japonica GN=LAC7 ... [more]
LAC11_ARATH7.602e-1127.65Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832213 ID=CF832213; Name=CF832213; organism=Citrus sinensis; type=EST; length=665bp
TAGATCTCAGCCAGGTGTTAAGGGAAAAAAACCTGCAACTCCTCCGGCCC
TAACTCTCTTAAACTATCATCCCACTTCTGCTTCCAAAATGCCTCTATCC
CCGCCACCTATAACTCCTATATGGGACGACTATGATCACAGCAAATCATT
CTCCAACAAAATATTTGCCCTAATGGGATCCCCCAAGCCTCCCACAAATT
TCCACCGTCGGCTCACCCTTCTTAACACTCAAAACACCATTAACGGGTTC
ACTAAGTGGGCTATTAACAATGTGACCCTGAATTTACCCCCCACTCCTTA
CTTAGGATCCATCAAATATGGTCTTAAAGATGCTTTTGATCAGAATGGTC
CCCCCGAAAACTTCTCGAATGAGTATGACGTGATGAAACCTCCTGTAAAC
GCTAATACAACTCTTGGAAGTGGGGTTTACATGCTTGGTTTAAACACCAC
TGTTGATGTTATACTTCATAATGCAAACGCGATAAGGCCAAACTTGAGTG
AAACCCACCCTTGGCATTTGCATGGGCATGATTTTTGGGTATTAGGGCGC
GGAGAAGGGAAGTTTACGAAAGAAGATGAGAAGAAATTTAACTTGAAGAA
TCCACCATTGAAAAATACTGCGGTGATATTCCCATATGGCTGGACTGCTT
TAAGATTTGTTGCTG
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