CF832217

Overview
NameCF832217
Unique NameCF832217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:108..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.623e-36
Identity = 66/113 (58.41%), Postives = 87/113 (76.99%), Query Frame = -1
Query:  213 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 551
            EG V  CH+ E W  +LQ++ +TK+LV VDFTA+WCGPCR I P   EL+KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVG+KK++L++ +A   A A+
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.245e-34
Identity = 67/116 (57.76%), Postives = 91/116 (78.45%), Query Frame = -1
Query:  210 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 557
            A EG+VI CHTVE W E+L+ +NE+K+L+V+DFTA+WC PCRFIAP  A+LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+F+KEG+I + VVG+ KEE+   + KH    +A
Sbjct:    2 AAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVVAA 117          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 6.180e-34
Identity = 66/117 (56.41%), Postives = 87/117 (74.36%), Query Frame = -1
Query:  222 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 572
            A  AA   G+VI  H++E W  Q++++N  K+LVV+DFTASWCGPCR +AP  A+LAKK P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+VVG+ KEEL   +  H A
Sbjct:   10 ATAAAVGAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAA 126          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 66/123 (53.66%), Postives = 90/123 (73.17%), Query Frame = -1
Query:  210 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 566
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVG+ KEE++  + KH   A+A
Sbjct:    1 MAATAELIPAGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 66/123 (53.66%), Postives = 90/123 (73.17%), Query Frame = -1
Query:  210 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 566
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVG+ KEE++  + KH   A+A
Sbjct:    1 MAATAEVIPAGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 66/123 (53.66%), Postives = 90/123 (73.17%), Query Frame = -1
Query:  210 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 566
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVG+ KEE++  + KH   A+A
Sbjct:    1 MAATAEVIPAGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.181e-22
Identity = 43/97 (44.33%), Postives = 72/97 (74.23%), Query Frame = -1
Query:  237 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 527
            T E+W+++L +++   ++VV +F+A+WCGPC+ +APF  EL++K  +++FL VDVDEL   ++ W ++A PTF FLK G+ + K+VG+ K ELQ+ +
Sbjct:   30 TKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.256e-22
Identity = 46/109 (42.20%), Postives = 75/109 (68.81%), Query Frame = -1
Query:  231 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 557
            +E  +V+   +   W     +  E+ +L+VVDF+ASWCGPCR I P +  +A K  +V F+K+DVDEL  VA ++ V AMPTF+ +K GK +++++G+KK+EL++ ++K
Sbjct:   22 SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.209e-21
Identity = 42/97 (43.30%), Postives = 70/97 (72.16%), Query Frame = -1
Query:  237 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 527
            T E W+++L +++   ++V+ +F+A WCGPC+ IAP+  EL++  P+++FL +DVDEL   +  W ++A PTF FL++G+ VDK+VG+ K EL + I
Sbjct:   31 TKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20
Identity = 47/94 (50.00%), Postives = 67/94 (71.28%), Query Frame = -1
Query:  237 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 518
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ VD+  G+ KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of CF832217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
TRXH_PICMA8.623e-3658.41Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH3_ARATH1.245e-3457.76Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT6.180e-3456.41Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_BRARA1.289e-3153.66Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL1.289e-3153.66Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA1.289e-3153.66Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH9_ARATH3.181e-2244.33Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_ARATH9.256e-2242.20Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_POPJC1.209e-2143.30Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
THIO_HORSE3.889e-2050.00Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832217 ID=CF832217; Name=CF832217; organism=Citrus sinensis; type=EST; length=650bp
TTTTTTTTTTTTTTTTTACCCCAATATGAAATTAAATTATTGTCCATACC
ACAGTATGAGCTTCATAGAACAGTAAATTACGGAACATTCAAACACACAA
ACAAACACAATCCCATAACCACTCTAATAAGTAAATTACAGACTGATAGC
ATATATTGAGGTCTATAGCCTCTAAAGCCAAAAGGCAGGAGGATAGTTAT
AACTTATTAGGCAGAGGCAGTTGCCAGATGCTTGGCAATAGTCTGCTGCA
GTTCCTCTTTCTTTGATCCAACCACCTTGTCCACAATCTTCCCCTCTTTC
AGGAACATGAAAGTTGGCATGGCCTCCACTGCCCAGTCAGTGGCAACACT
CTTCAGTTCATCCACATCAACCTTCAGAAACAGGACATTAGGCAGTTTCT
TGGCCAGCTCTGCCAAGAAAGGAGCAATGAAACGGCATGGTCCGCACCAC
GAAGCAGTGAAATCAACAACAACCAGCTGTTTGGTTTCATTGCTCTTCTG
GAGCTGCTCGTTCCAGGCCTCAACGGTGTGGCACCCGATGACTTGTCCCT
CTTCTGCTGCTGCCATTTCTGCTTTCCGCGGTTATTACCACCACTACTCC
ACCCAACGATACTTCTATTCTCTCCCTCGCTTTCTTGCTCTTGGTGATTT
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