CF832217

Overview
NameCF832217
Unique NameCF832217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:108..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  225 TKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 485
            +++LV+VDF A WCGPCR I+P + ELA++ +  V  +K++ DE  S++ ++ + ++PT M  K+GK VD V+G+  K  L   + K+L
Sbjct:   19 SEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  225 VVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 470
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + I KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKHL 104          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  282 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 512
            N++LQK   +   VVVDF A WC PC+ IAP   +L+ K  +P+VL F KV+VD ++  A  + + AMPTFMF KEGK V
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQV 87          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  225 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 470
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  225 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 470
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  225 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 470
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  225 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 470
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  225 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 470
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  225 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 470
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CF832217 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  225 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 470
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of CF832217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO_CYACA1.212e-1340.45Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_STAS11.582e-1350.00Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_FUSCU1.582e-1350.00Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
THIO_STAAW2.067e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU2.067e-1348.81Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS2.067e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR2.067e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN2.067e-1348.81Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM2.067e-1348.81Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC2.067e-1348.81Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01I03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832217 ID=CF832217; Name=CF832217; organism=Citrus sinensis; type=EST; length=650bp
TTTTTTTTTTTTTTTTTACCCCAATATGAAATTAAATTATTGTCCATACC
ACAGTATGAGCTTCATAGAACAGTAAATTACGGAACATTCAAACACACAA
ACAAACACAATCCCATAACCACTCTAATAAGTAAATTACAGACTGATAGC
ATATATTGAGGTCTATAGCCTCTAAAGCCAAAAGGCAGGAGGATAGTTAT
AACTTATTAGGCAGAGGCAGTTGCCAGATGCTTGGCAATAGTCTGCTGCA
GTTCCTCTTTCTTTGATCCAACCACCTTGTCCACAATCTTCCCCTCTTTC
AGGAACATGAAAGTTGGCATGGCCTCCACTGCCCAGTCAGTGGCAACACT
CTTCAGTTCATCCACATCAACCTTCAGAAACAGGACATTAGGCAGTTTCT
TGGCCAGCTCTGCCAAGAAAGGAGCAATGAAACGGCATGGTCCGCACCAC
GAAGCAGTGAAATCAACAACAACCAGCTGTTTGGTTTCATTGCTCTTCTG
GAGCTGCTCGTTCCAGGCCTCAACGGTGTGGCACCCGATGACTTGTCCCT
CTTCTGCTGCTGCCATTTCTGCTTTCCGCGGTTATTACCACCACTACTCC
ACCCAACGATACTTCTATTCTCTCCCTCGCTTTCTTGCTCTTGGTGATTT
back to top