CF832221

Overview
NameCF832221
Unique NameCF832221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2389 contig Csv1_Contig2389:29..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_OSTOS (60S ribosomal protein L37a OS=Ostertagia ostertagi GN=rpl-37a PE=3 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 5.743e-31
Identity = 62/91 (68.13%), Postives = 71/91 (78.02%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            M KRTKK GIVGKYGTRYGASLRK +KKME++QHS+Y C FCGK A++R AVGIW C  C K  AGGAY   T +A TVRST+RRLR+  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSRYTCPFCGKDAMRRGAVGIWNCSKCKKTVAGGAYVYGTVAAATVRSTVRRLRDLKE 91          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL43_YEAST (60S ribosomal protein L43 OS=Saccharomyces cerevisiae GN=RPL43A PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.279e-30
Identity = 61/91 (67.03%), Postives = 71/91 (78.02%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            M KRTKK GI GKYG RYG+SLR+Q+KK+E+ QH++Y C FCGK  VKR A GIW C  C K  AGGAYT++TA+A TVRSTIRRLRE  E
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRSTIRRLREMVE 91          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL43_CANGA (60S ribosomal protein L43 OS=Candida glabrata GN=RPL43 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            M KRTKK GI GKYG RYG+SLR+Q+KK+EV QH++Y C FCGK  V+R A GIW C  C K  AGGAYT++TA+A TVRSTIRRLR+  E
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKKTVAGGAYTVSTAAAATVRSTIRRLRDMVE 91          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_DROME (60S ribosomal protein L37a OS=Drosophila melanogaster GN=RpL37A PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 3.722e-30
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            M KRTKK GIVGKYGTRYGASLRK +KKME++QHSKY C FCGK ++KR  VGIW CK C +  AGGA+  +T +A +VRS +RRLRE  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSKYTCSFCGKDSMKRAVVGIWSCKRCKRTVAGGAWVYSTTAAASVRSAVRRLRETKE 91          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_SCHMA (60S ribosomal protein L37a (Fragment) OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.349e-30
Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = -3
Query:  151 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 417
            KRTKK GIVGKYG RYGASLRK IKK+E+SQH+KY C FCGK ++KRKA GIW CK C KV AGGAY  +T +A T+R+ IRRLR+  E
Sbjct:    2 KRTKKVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVVAGGAYVCSTTAATTIRAAIRRLRDAHE 90          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL43B_SCHPO (60S ribosomal protein L43-B OS=Schizosaccharomyces pombe GN=rpl43b PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.564e-28
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGC--KDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            MTKRTKK G+ GKYG RYGASLR+ ++K+EV QHS+Y C FCG+  VKR A GIW C  K C K  AGGA+T+ TA+A + RSTIRRLRE  E
Sbjct:    1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGAWTVTTAAATSARSTIRRLREMVE 93          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL43A_SCHPO (60S ribosomal protein L43-A OS=Schizosaccharomyces pombe GN=rpl43a PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.564e-28
Identity = 60/93 (64.52%), Postives = 71/93 (76.34%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGC--KDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            MTKRTKK G+ GKYG RYGASLR+ ++K+EV QHS+Y C FCG+  VKR A GIW C  K C KV AGGA+T+ TA+A + RSTIRRLRE  E
Sbjct:    1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAATSARSTIRRLREMVE 93          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_MYXGL (60S ribosomal protein L37a (Fragment) OS=Myxine glutinosa GN=rpl37a PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.668e-28
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = -3
Query:  151 GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 399
            GIVGKYGTRYGASLRK +KK+E++QHSKY C FCGK  +KR+AVGIW C  C K  AGGA+T NT+SAVTV+S IRRLRE  +
Sbjct:    2 GIVGKYGTRYGASLRKMVKKIEITQHSKYTCTFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTSSAVTVKSAIRRLREMKD 84          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_PLAF7 (60S ribosomal protein L37a OS=Plasmodium falciparum (isolate 3D7) GN=RPL37A PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.943e-28
Identity = 57/91 (62.64%), Postives = 70/91 (76.92%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            M++RTKK G+ GKYGTRYG+SLRKQIKK+E+ QH+KY C FCGK A KR  VGIW CK C +   GGA++L T +AV  +STI RLR+Q E
Sbjct:    1 MSRRTKKVGLTGKYGTRYGSSLRKQIKKIELMQHAKYLCTFCGKTATKRTCVGIWKCKKCKRKVCGGAWSLTTPAAVAAKSTIIRLRKQKE 91          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37L_HUMAN (Putative 60S ribosomal protein L37a-like OS=Homo sapiens GN=RPL37L PE=5 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.125e-21
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = -3
Query:  160 MTKRTKKAG-IVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 423
            M K TKK G IV KY T +GASL K +K++E+SQH+KY C FCGK  +KR+AV I  C  C K  AG A+T NT SAV V+S IRRL+E
Sbjct:    1 MAKCTKKVGGIVSKYRTHHGASLWKMVKEIEISQHTKYTCSFCGKTKMKRRAVKIRHCNSCMKTVAGSAWTYNTTSAVMVKSAIRRLKE 89          
The following BLAST results are available for this feature:
BLAST of CF832221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL37A_OSTOS5.743e-3168.1360S ribosomal protein L37a OS=Ostertagia ostertagi... [more]
RL43_YEAST1.279e-3067.0360S ribosomal protein L43 OS=Saccharomyces cerevis... [more]
RL43_CANGA1.671e-3065.9360S ribosomal protein L43 OS=Candida glabrata GN=R... [more]
RL37A_DROME3.722e-3065.9360S ribosomal protein L37a OS=Drosophila melanogas... [more]
RL37A_SCHMA6.349e-3068.5460S ribosomal protein L37a (Fragment) OS=Schistoso... [more]
RL43B_SCHPO1.564e-2863.4460S ribosomal protein L43-B OS=Schizosaccharomyces... [more]
RL43A_SCHPO1.564e-2864.5260S ribosomal protein L43-A OS=Schizosaccharomyces... [more]
RL37A_MYXGL2.668e-2869.8860S ribosomal protein L37a (Fragment) OS=Myxine gl... [more]
RL37A_PLAF75.943e-2862.6460S ribosomal protein L37a OS=Plasmodium falciparu... [more]
RL37L_HUMAN4.125e-2158.43Putative 60S ribosomal protein L37a-like OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832221 ID=CF832221; Name=CF832221; organism=Citrus sinensis; type=EST; length=713bp
TTTTTTTTTTCCGTTTAATAAAGAGATTCAAATTCAAAACTTTTTAAACC
ATATATCCAAGCATAGAAATTCCTTTAGACAATCCTGCCCCAGGAATTAC
TCCTATCACAAATAAATGAAAAAAAAGATAGATTGGCAACAAAATTAACT
CTCGGTCTGTTCCCTCAGCCTCCGAATTGTACTCCTCACGGTCACAGCAC
TAGCAGTATTCAAAGTGTAAGCACCTCCAGCTTTCACCTTGCCACAGTCT
TTGCAACCCCAGATTCCCACAGCCTTCCTCTTCACAGCATACTTCCCACA
GAATTCACAGAAGTACTTGCTGTGTTGACTGACCTCCATCTTCTTAATCT
GCTTACGCAGACTGGCACCATAACGGGTACCATACTTCCCAACAATTCCT
GCCTTCTTGGTCCTCTTTGTCATTTTGCAGAAGCAGACCAGAAACTCTAA
AAATCGCACTTGCTGCTGCTGAGAATAGAGAGAGATGAGAGTAGCCGAGG
GTTTTTTTTTTTTTTTTTTTTTTTTGGGGGACACACACAAAAACTTTTAT
TGATTTATTTCCTTTTTCAGGAAAATACTTAGCTCAAAAGTAAACAAAAA
GATTGCTTGTACGTCTCAAGAAATCTTATAAGTTGAACTAAACCATACTA
AAACATTGTCATGATTGATAGGTAATAGTATACCTATCATTTATTTAATT
AAACCAAACCGAA
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