CF832221

Overview
NameCF832221
Unique NameCF832221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2389 contig Csv1_Contig2389:29..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_METST (50S ribosomal protein L37Ae OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 30/83 (36.14%), Postives = 44/83 (53.01%), Query Frame = -3
Query:  166 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRL 414
            +  K G  G++G RYG   ++ +K +E   H+K+ C  C +  VKR   GIW C+ CG V  GGAY   T      +  I+R+
Sbjct:    3 KKSKVGSTGRFGARYGRKAKRTVKDIEDKMHAKHVCPKCDRPGVKRTHAGIWKCRKCGAVFTGGAYIPTTPMGKVAKRNIKRI 85          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_THEVO (50S ribosomal protein L37Ae OS=Thermoplasma volcanium GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = -3
Query:  217 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAY 423
            M+KRT K G  G++G RYG ++RK+  ++   + + Y C  C K  VKR A GIW C+ CG   AGGAY
Sbjct:    1 MSKRTLKVGAAGRFGPRYGVTIRKEWNEIYKQKIALYTCPSCKKKRVKRLAAGIWVCRHCGYKFAGGAY 69          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_AERPE (50S ribosomal protein L37Ae OS=Aeropyrum pernix GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = -3
Query:  214 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKY-AVKRKAVGIWGCKDCGKVKAGGAYT 414
            RTK  G  G+YG RYG S+RK+++ +   ++  + C FCG    V+R +VG+W C+ CG   AG AYT
Sbjct:    3 RTKVVGPAGRYGPRYGVSVRKRVRDILARRYQPHECPFCGSTGTVRRVSVGVWSCRKCGNTWAGAAYT 70          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_NANEQ (50S ribosomal protein L37Ae OS=Nanoarchaeum equitans GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = -3
Query:  217 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAY 411
            TKK G  G++G RYG  +RK++  +E+ Q  K+ C FC   AV R+A GI+ CK CGK   G AY
Sbjct:    6 TKKVGPTGRFGPRYGLGIRKRVLTVEIKQRKKHVCPFCRSKAVIREAYGIYRCKKCGKQFTGLAY 70          
The following BLAST results are available for this feature:
BLAST of CF832221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL37A_METST7.798e-1236.1450S ribosomal protein L37Ae OS=Methanosphaera stad... [more]
RL37A_THEVO1.737e-1146.3850S ribosomal protein L37Ae OS=Thermoplasma volcan... [more]
RL37A_AERPE1.737e-1144.1250S ribosomal protein L37Ae OS=Aeropyrum pernix GN... [more]
RL37A_NANEQ2.269e-1147.6950S ribosomal protein L37Ae OS=Nanoarchaeum equita... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832221 ID=CF832221; Name=CF832221; organism=Citrus sinensis; type=EST; length=713bp
TTTTTTTTTTCCGTTTAATAAAGAGATTCAAATTCAAAACTTTTTAAACC
ATATATCCAAGCATAGAAATTCCTTTAGACAATCCTGCCCCAGGAATTAC
TCCTATCACAAATAAATGAAAAAAAAGATAGATTGGCAACAAAATTAACT
CTCGGTCTGTTCCCTCAGCCTCCGAATTGTACTCCTCACGGTCACAGCAC
TAGCAGTATTCAAAGTGTAAGCACCTCCAGCTTTCACCTTGCCACAGTCT
TTGCAACCCCAGATTCCCACAGCCTTCCTCTTCACAGCATACTTCCCACA
GAATTCACAGAAGTACTTGCTGTGTTGACTGACCTCCATCTTCTTAATCT
GCTTACGCAGACTGGCACCATAACGGGTACCATACTTCCCAACAATTCCT
GCCTTCTTGGTCCTCTTTGTCATTTTGCAGAAGCAGACCAGAAACTCTAA
AAATCGCACTTGCTGCTGCTGAGAATAGAGAGAGATGAGAGTAGCCGAGG
GTTTTTTTTTTTTTTTTTTTTTTTTGGGGGACACACACAAAAACTTTTAT
TGATTTATTTCCTTTTTCAGGAAAATACTTAGCTCAAAAGTAAACAAAAA
GATTGCTTGTACGTCTCAAGAAATCTTATAAGTTGAACTAAACCATACTA
AAACATTGTCATGATTGATAGGTAATAGTATACCTATCATTTATTTAATT
AAACCAAACCGAA
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