CF832234

Overview
NameCF832234
Unique NameCF832234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6216 contig Csv1_Contig6216:44..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_DICDI (60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 53/103 (51.46%), Postives = 78/103 (75.73%), Query Frame = -2
Query:  233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYK-AKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538
            ++Y +G +LGY+RS++ QYPN SLI+IEGV  +ED ++Y GK++  + K +K  KN + ++  WGK+ + HG+SGVV+A+F  NLPPK+MG  VRV +YPSNI
Sbjct:    3 KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSKSAKNPTGHKISWGKICKTHGSSGVVQARFARNLPPKAMGAPVRVMLYPSNI 105          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_CAEEL (60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = -2
Query:  233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKA--KVKKNGSPY----RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538
            RLYV+    G+KR    Q  +TSL+++EGV  KED  +Y GKR+ Y+YKA  K  K G       R IWGK+ RPHGN+G VRAKF  N+PP ++G R+RV +YPSNI
Sbjct:   17 RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_RAT (60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.992e-25
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2
Query:  233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538
            RL+ +    GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G P   R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_MOUSE (60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.992e-25
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2
Query:  233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538
            RL+ +    GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G P   R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_PONAB (60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2
Query:  233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538
            RL+ +    GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G P   R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_MACFA (60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2
Query:  233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538
            RL+ +    GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G P   R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_HUMAN (60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2
Query:  233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538
            RL+ +    GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G P   R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_BOVIN (60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.514e-25
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = -2
Query:  233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538
            RL+ +    GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G P   R IWGK+ R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKITRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
The following BLAST results are available for this feature:
BLAST of CF832234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL35A_DICDI1.314e-2551.4660S ribosomal protein L35a OS=Dictyostelium discoi... [more]
RL35A_CAEEL2.241e-2551.8560S ribosomal protein L35a OS=Caenorhabditis elega... [more]
RL35A_RAT4.992e-2553.2760S ribosomal protein L35a OS=Rattus norvegicus GN... [more]
RL35A_MOUSE4.992e-2553.2760S ribosomal protein L35a OS=Mus musculus GN=Rpl3... [more]
RL35A_PONAB6.519e-2553.2760S ribosomal protein L35a OS=Pongo abelii GN=RPL3... [more]
RL35A_MACFA6.519e-2553.2760S ribosomal protein L35a OS=Macaca fascicularis ... [more]
RL35A_HUMAN6.519e-2553.2760S ribosomal protein L35a OS=Homo sapiens GN=RPL3... [more]
RL35A_BOVIN8.514e-2552.3460S ribosomal protein L35a OS=Bos taurus GN=RPL35A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832234 ID=CF832234; Name=CF832234; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTTCCCCAAATATGCAGTAAGATAGAACCTTTTGGG
GCAAAAAATTCTGACATCAGTTTTAGCGAAAACATTGTCTCATTTACTAT
CCTAATGAAACAAAAATGATTCAGCTCCATAACACACATGAATTCAAATC
TAGCTTATAACACAAGTTAAAAAGCAGATTCTTTCGAGTTGTCAACAACC
TCAATCTGACATCTATGGGCCGAAGGACCTCAGATGTTGCTGGGGTACAT
GAAGACCCTAACTCTGTCTCCCATGGACTTTGGAGGCAGATTGGACTTGA
ATTTAGCACGAACAACCCCACTGTTTCCATGAGGCCTTGCGACCTTGCCC
CAAATGCAACGATAGGGTGATCCATTCTTCTTCACTTTAGCCTTGTAAAT
GTAAGCCATACGCTTCCCACAGTACCATGACACATCTTCCTTGGGGTTCA
CTCCCTCAATTTGAATCAATGAAGTGTTTGGGTACTGGTTGGACTTCGAC
CTCTTGTATCCGAGGATGGTTCCTCTGACATAGAGTCTGACTCGCTCTCC
TTGTCGTCCCTTTACCATTTTGACTGAACAACACAACAAGCTCTGCAAGT
GAGACTGAGGCTGCGAGCGATACAAAATAAGAGCA
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