CF832234
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_DICDI (60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25 Identity = 53/103 (51.46%), Postives = 78/103 (75.73%), Query Frame = -2 Query: 233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYK-AKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538 ++Y +G +LGY+RS++ QYPN SLI+IEGV +ED ++Y GK++ + K +K KN + ++ WGK+ + HG+SGVV+A+F NLPPK+MG VRV +YPSNI Sbjct: 3 KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSKSAKNPTGHKISWGKICKTHGSSGVVQARFARNLPPKAMGAPVRVMLYPSNI 105
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_CAEEL (60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1 SV=3) HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25 Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = -2 Query: 233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKA--KVKKNGSPY----RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538 RLYV+ G+KR Q +TSL+++EGV KED +Y GKR+ Y+YKA K K G R IWGK+ RPHGN+G VRAKF N+PP ++G R+RV +YPSNI Sbjct: 17 RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_RAT (60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.992e-25 Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2 Query: 233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538 RL+ + GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G P R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_MOUSE (60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 4.992e-25 Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2 Query: 233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538 RL+ + GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G P R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_PONAB (60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25 Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2 Query: 233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538 RL+ + GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G P R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_MACFA (60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25 Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2 Query: 233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538 RL+ + GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G P R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_HUMAN (60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25 Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2 Query: 233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538 RL+ + GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G P R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_BOVIN (60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 8.514e-25 Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = -2 Query: 233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538 RL+ + GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G P R IWGK+ R HGNSG+VRAKF+SNLP K++G R+RV +YPS I Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKITRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110 The following BLAST results are available for this feature:
BLAST of CF832234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832234 ID=CF832234; Name=CF832234; organism=Citrus sinensis; type=EST; length=635bpback to top |