CF832237

Overview
NameCF832237
Unique NameCF832237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6048 contig Csv1_Contig6048:29..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA23_ARATH (60S acidic ribosomal protein P2-3 OS=Arabidopsis thaliana GN=RPP2C PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 35/62 (56.45%), Postives = 52/62 (83.87%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MKV+AA+LLA LGGN +P+++D+K IL SVGA+ ++ +++LL S +K  D+TELIA+GREK+
Sbjct:    1 MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKM 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA4_CANAL (60S acidic ribosomal protein P2-B OS=Candida albicans GN=RPP2B PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MK +AAYLL V GGNTSPSA DI  +L SVG + E++RL+ LL +++GKD+ ELIA G  KL
Sbjct:    1 MKYLAAYLLLVQGGNTSPSASDITALLESVGVEAEESRLQALLKDLEGKDLQELIAEGNTKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_ASPFU (60S acidic ribosomal protein P2 OS=Aspergillus fumigatus GN=AFUA_2G10100 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MK +AAYLL  L GNTSPS++D+K +L SVG D ++ RL  L++E++GKD+ ELIA G  KL
Sbjct:    1 MKHLAAYLLLALAGNTSPSSEDVKAVLSSVGIDADEERLNKLIAELEGKDLQELIAEGSTKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_HORSE (60S acidic ribosomal protein P2 OS=Equus caballus GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            M+ VA+YLLA LGGNTSPSA DIK IL SVG + +D+RL+ ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLDKVISELNGKNIEDVIAQGIGKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_SCHPO (60S acidic ribosomal protein P2-alpha OS=Schizosaccharomyces pombe GN=rpp201 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MK +AAYLL  +GG  SPSA DI+ +L +VG + E  R+E L++E+ GKDI ELIA+G EKL
Sbjct:    1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA6_SCHPO (60S acidic ribosomal protein P2-C OS=Schizosaccharomyces pombe GN=rpp203 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.860e-12
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MK +AAYLL  +GG  SPSA DI+ +L +VG + E  R+E L+ E+ GKDI ELIA+G EKL
Sbjct:    1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_MOUSE (60S acidic ribosomal protein P2 OS=Mus musculus GN=Rplp2 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            M+ VA+YLLA LGGN+SPSA DIK IL SVG + +D+RL  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_HUMAN (60S acidic ribosomal protein P2 OS=Homo sapiens GN=RPLP2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            M+ VA+YLLA LGGN+SPSA DIK IL SVG + +D+RL  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_EUPRA (60S acidic ribosomal protein P2 OS=Euplotes raikovi PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MK +AAY L VLGGN+SPSADD+K +L SVG D E ++L+ LL  ++GK + ELI +G  K+
Sbjct:    1 MKYIAAYALLVLGGNSSPSADDVKKVLKSVGVDSEQDKLDALLKNLEGKQLHELIEAGSSKV 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA25_ARATH (60S acidic ribosomal protein P2-5 OS=Arabidopsis thaliana GN=RPP2E PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MKVVAAYLLA L GN +PS  D+K I+ SVGA+ +  +++L  S +K +D+TELIA GREK+
Sbjct:    1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKM 62          
The following BLAST results are available for this feature:
BLAST of CF832237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RLA23_ARATH1.682e-1356.4560S acidic ribosomal protein P2-3 OS=Arabidopsis t... [more]
RLA4_CANAL2.869e-1359.6860S acidic ribosomal protein P2-B OS=Candida albic... [more]
RLA2_ASPFU4.894e-1356.4560S acidic ribosomal protein P2 OS=Aspergillus fum... [more]
RLA2_HORSE6.391e-1359.6860S acidic ribosomal protein P2 OS=Equus caballus ... [more]
RLA2_SCHPO8.347e-1356.4560S acidic ribosomal protein P2-alpha OS=Schizosac... [more]
RLA6_SCHPO1.860e-1256.4560S acidic ribosomal protein P2-C OS=Schizosacchar... [more]
RLA2_MOUSE3.172e-1258.0660S acidic ribosomal protein P2 OS=Mus musculus GN... [more]
RLA2_HUMAN3.172e-1258.0660S acidic ribosomal protein P2 OS=Homo sapiens GN... [more]
RLA2_EUPRA3.172e-1254.8460S acidic ribosomal protein P2 OS=Euplotes raikov... [more]
RLA25_ARATH3.172e-1256.4560S acidic ribosomal protein P2-5 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832237 ID=CF832237; Name=CF832237; organism=Citrus sinensis; type=EST; length=673bp
TCGAGTTTTTTCCTTTTTTTTTTCATTGCATATGTTTCCATTCAAGCAGA
ACATGGAATGGATCTAAACTTCTGACAGAAACATCCATGGAGTCATTTGT
ATGATGAAATAATAGAAAATGATAGTTGCCAGATATATAAATCTCTGAAC
AGGCATAACAAAGCAGCATATCAATATGGAGCCACAACTTAACCCGTCAA
AAGTTTCATCTAAGGATTATATAAACTAAAAACTACAGAACTCCAAAATA
ACAAAACTTTTAAGTCCAGTTAGAAGCTCCCAATTGAGGAGAAAGAGGTG
AAAAAAATGCTGAAGAGCTCTCTAGTCGAAAAGACTGAAACCCATATCAT
CATCAGATTCTTCTTTCTCCTCCACTTTCTCCTCTTTCTTGGCCTCAGCA
GCAGCTGGGGCAGCGCCTGCACCACCGGCAGATGGAGCATCAGCAACTGC
AACTCCACCACCAGAAGGCACTGAGGCCAATTTCTCCCGCCCAGATGCAA
TAAGCTCAGTTATGTCTTTGCCTTTAACTTCTGATAGAAGGAGCTCAAGC
CTATTGTCCTCGCAATCAGCTCCAACAGAGCCAAGGATTCCCTTAATATC
ATCGGCGGAAGGGCTGGTGTTTCCTCCCAAAACAGCCAACAGATATGCTG
CCACCACCTTCATTTCTTCTTTC
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