CF832237

Overview
NameCF832237
Unique NameCF832237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6048 contig Csv1_Contig6048:29..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA4_SCHPO (60S acidic ribosomal protein P2-beta OS=Schizosaccharomyces pombe GN=rpp202 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MK +AAYLL  +GG  SPSA DI+ +L +VG + E  R+E L+SE+ GK+I ELIA+G EKL
Sbjct:    1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_PODAN (60S acidic ribosomal protein P2 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MK +AAYLL  LGG  +PSA D+K +L SVG + + +RL+ L+SE++GKD+ ELIA G  KL
Sbjct:    1 MKHLAAYLLLTLGGKATPSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_BOVIN (60S acidic ribosomal protein P2 OS=Bos taurus GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            M+ VA+YLLA LGGN+SPSA DIK IL SVG + +D+RL  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIGKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_RAT (60S acidic ribosomal protein P2 OS=Rattus norvegicus GN=Rplp2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            M+ VA+YLLA LGGN++PSA DIK IL SVG + +D RL  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSNPSAKDIKKILDSVGIEADDERLNKVISELNGKNIEDVIAQGVGKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_RHOGU (60S acidic ribosomal protein P2 OS=Rhodotorula glutinis PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MK VAAYLL V  GNTSPSA+D+K +L +     ++ RL +L+ E++GKD+ E+IA G +KL
Sbjct:    1 MKHVAAYLLLVSAGNTSPSAEDVKKVLAAADIQADEERLSVLIKELEGKDVNEVIAEGSKKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_PIG (60S acidic ribosomal protein P2 OS=Sus scrofa GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            M+ VA+YLLA LGGNTSPSA DIK  L SVG + + +RL  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNTSPSAKDIKKXLDSVGIEADXDRLNKVISELNGKNIEDVIAQGIGKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_ARTSA (60S acidic ribosomal protein P2 OS=Artemia salina PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            M+ VAAYLLA L GN  PS  DI+ IL SVG +C  ++L+ +++E+KGKD+  LIA G+ KL
Sbjct:    1 MRYVAAYLLAALSGNADPSTADIEKILSSVGIECNPSQLQKVMNELKGKDLEALIAEGQTKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_CRYST (60S acidic ribosomal protein P2 OS=Cryptochiton stelleri PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            M+ VAAY+LA LGGN  PS  D+K IL SVG + E ++L  +++E+KGK++ E+IA G +KL
Sbjct:    1 MRYVAAYMLATLGGNEKPSESDLKKILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEKKL 62          
The following BLAST results are available for this feature:
BLAST of CF832237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RLA4_SCHPO4.143e-1256.4560S acidic ribosomal protein P2-beta OS=Schizosacc... [more]
RLA2_PODAN4.143e-1254.8460S acidic ribosomal protein P2 OS=Podospora anser... [more]
RLA2_BOVIN4.143e-1258.0660S acidic ribosomal protein P2 OS=Bos taurus GN=R... [more]
RLA2_RAT9.229e-1256.4560S acidic ribosomal protein P2 OS=Rattus norvegic... [more]
RLA2_RHOGU2.685e-1151.6160S acidic ribosomal protein P2 OS=Rhodotorula glu... [more]
RLA2_PIG2.685e-1156.4560S acidic ribosomal protein P2 OS=Sus scrofa GN=R... [more]
RLA2_ARTSA2.685e-1153.2360S acidic ribosomal protein P2 OS=Artemia salina ... [more]
RLA2_CRYST7.813e-1151.6160S acidic ribosomal protein P2 OS=Cryptochiton st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832237 ID=CF832237; Name=CF832237; organism=Citrus sinensis; type=EST; length=673bp
TCGAGTTTTTTCCTTTTTTTTTTCATTGCATATGTTTCCATTCAAGCAGA
ACATGGAATGGATCTAAACTTCTGACAGAAACATCCATGGAGTCATTTGT
ATGATGAAATAATAGAAAATGATAGTTGCCAGATATATAAATCTCTGAAC
AGGCATAACAAAGCAGCATATCAATATGGAGCCACAACTTAACCCGTCAA
AAGTTTCATCTAAGGATTATATAAACTAAAAACTACAGAACTCCAAAATA
ACAAAACTTTTAAGTCCAGTTAGAAGCTCCCAATTGAGGAGAAAGAGGTG
AAAAAAATGCTGAAGAGCTCTCTAGTCGAAAAGACTGAAACCCATATCAT
CATCAGATTCTTCTTTCTCCTCCACTTTCTCCTCTTTCTTGGCCTCAGCA
GCAGCTGGGGCAGCGCCTGCACCACCGGCAGATGGAGCATCAGCAACTGC
AACTCCACCACCAGAAGGCACTGAGGCCAATTTCTCCCGCCCAGATGCAA
TAAGCTCAGTTATGTCTTTGCCTTTAACTTCTGATAGAAGGAGCTCAAGC
CTATTGTCCTCGCAATCAGCTCCAACAGAGCCAAGGATTCCCTTAATATC
ATCGGCGGAAGGGCTGGTGTTTCCTCCCAAAACAGCCAACAGATATGCTG
CCACCACCTTCATTTCTTCTTTC
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