CF832245

Overview
NameCF832245
Unique NameCF832245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832245_ssr237 microsatellite CF832245_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:459..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER2_SOLLC (Suberization-associated anionic peroxidase 2 OS=Solanum lycopersicum GN=TAP2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.751e-19
Identity = 70/191 (36.65%), Postives = 91/191 (47.64%), Query Frame = -1
Query:  264 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 836
            + V LGR D+ TAN + A   LP P D L      F +     + ++VAL+GAHT G A+C            +G  +P        QL+  C        L   D TTP VFD  Y+ NL   +G++ SDQ L  T    TA  V  +  N   F ++F  +MI+MGNL P  G Q EIR  C RVN  S
Sbjct:  186 YTVALGRSDATTANFSGAINQLPAPSDNLTVQIQKFSDKNFTVR-EMVALAGAHTVGFARCS-------TVCTSGNVNPAA------QLQCNCSATLTDSDLQQLD-TTPAVFDKVYYDNLNNNQGIMFSDQVL--TGNTTTAGFVTTYSNNVTVFLEDFAAAMIKMGNLPPSAGAQLEIRDVCSRVNPTS 359          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER60_ARATH (Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.901e-19
Identity = 61/195 (31.28%), Postives = 101/195 (51.79%), Query Frame = -1
Query:  267 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSF--RNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFD--VTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLT-GNQGEIRLNCRRVNGN 836
            + +P GR D + ++  L +  LP P  T+ E  + F  R + LND   +V L G HT G   C F   RLY+F NT KPDP++D   +++L   CP+  +   + + D   T+ +  D  ++  ++  +G+L  DQ+L       T+ +V D   N N F   F  +M+ +G+++ ++    GEIR +CR    N
Sbjct:  141 YEIPTGRLDGKISSALLVD--LPSPKMTVAETAAKFDQRKLSLND---MVLLLGGHTIGVTHCSFIMDRLYNFQNTQKPDPSMDPKLVEELSAKCPKSSSTDGIISLDQNATSSNTMDVSFYKEIKVSRGVLHIDQKL--AIDDLTSKMVTDIA-NGNDFLVRFGQAMVNLGSVRVISKPKDGEIRRSCRSTCNN 327          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER65_ARATH (Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.095e-19
Identity = 64/192 (33.33%), Postives = 94/192 (48.96%), Query Frame = -1
Query:  258 VPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF-DVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNI 830
            V LGR+D   +       N+P    T+ ++   F+  G + + ++VALSGAHT G + C+ F  RLY      + D  ++  F   L+ LC        +A F DV TP  FDN YF NL+   GLL SD  L       T   V+ +  N+ AFF++F  +M ++G +       GE+R  C   N N N+
Sbjct:  151 VKLGRKDGFESKAHKVRGNVPMANQTVPDIHGIFKKNGFSLR-EMVALSGAHTIGFSHCKEFSDRLYG----SRADKEINPRFAAALKDLCKNHTVDDTIAAFNDVMTPGKFDNMYFKNLKRGLGLLASDHILIK--DNSTKPFVDLYATNETAFFEDFARAMEKLGTVGVKGDKDGEVRRRCDHFN-NLNV 334          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PERA_IPOBA (Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.313e-18
Identity = 69/191 (36.13%), Postives = 91/191 (47.64%), Query Frame = -1
Query:  264 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 836
            + V LGR+D+RTAN   AN  L GP + L    + F   G N   ++VAL G+HT G A+C      +  F N  +         +  L   C    N   L   D  TP  +D +YFS++   +GLL SD EL    G  T A V  +     AF  +F  +M++M NL P  G   EIR  C RVN NS
Sbjct:  175 YTVTLGRKDARTANFTGANTQLVGPNENLTSQLTKFAAKGFNGT-EMVALLGSHTIGFARCPLLC--ISTFINPAR---------VSTLNCNCSGTVNATGLVGLD-PTPTTWDQRYFSDVVNDQGLLFSDNELLK--GNTTNAAVRRYRDAMGAFLTDFAAAMVKMSNLPPSPGVALEIRDVCSRVNANS 350          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER8_ARATH (Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.134e-17
Identity = 57/186 (30.65%), Postives = 89/186 (47.85%), Query Frame = -1
Query:  273 VPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 830
            V  GRRD   +N +  +  L GP  ++     +F+++G N    +  + G HT G A C  F+ R+         DP +D+    +L+K C    +  V    D  TP   DN+ +  +  ++ +L+ D  L       T +IV DF  N   F ++F  +M +MG +  LTG+ GEIR NCR  N
Sbjct:  138 VRTGRRDGLRSNPS--DVKLLGPTVSVATSIKAFKSIGFNVSTMVALIGGGHTVGVAHCSLFQDRI--------KDPKMDSKLRAKLKKSCRGPNDPSVF--MDQNTPFRVDNEIYRQMIQQRAILRIDDNLIRD--GSTRSIVSDFAYNNKLFKESFAEAMQKMGEIGVLTGDSGEIRTNCRAFN 309          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER44_ARATH (Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.134e-17
Identity = 59/190 (31.05%), Postives = 88/190 (46.32%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGAD--TAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            ++VP GRRD   +N    + NLPGP   +      F   G+N    +  + G H+ G A C  F+ RL         D  ++ +    LR+ C    +       D  T    DN  +  +R ++G+L+ DQ L    G D  T+ IV  +  +   F K F  ++++MG +K LTG  GEIR NCR  N
Sbjct:  136 FSVPTGRRDGLRSNPN--DVNLPGPTIPVSASIQLFAAQGMNTNDMVTLIGGGHSVGVAHCSLFQDRL--------SDRAMEPSLKSSLRRKCSSPNDPTTF--LDQKTSFTVDNAIYGEIRRQRGILRIDQNL----GLDRSTSGIVSGYASSNTLFRKRFAEALVKMGTIKVLTGRSGEIRRNCRVFN 309          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.134e-17
Identity = 61/192 (31.77%), Postives = 93/192 (48.44%), Query Frame = -1
Query:  273 AVPLGRRDS-RTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPD----VFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 833
            +VPLGR+DS  T ++ +A+  LP     +D   S F N G+  + + VA+ GAHT G   C     R   F+N       +D  F   LR  CP+       A       D    +FD  Y+ +    +G L+ D E+ + P   T   VE F  +Q+ FF  F ++ +++ + K LTGN+G IR  C +V+
Sbjct:  154 SVPLGRKDSLSTPSKHVADSELPPSTADVDTTLSLFANKGMTIE-ESVAIMGAHTIGVTHCNNVLSR---FDNANATSENMDPRFQTFLRVACPEFSPTSQAAEATFVPNDQTSVIFDTAYYDDAIAGRGNLRIDSEIGADPR--TRPFVEAFAADQDRFFNAFSSAFVKLSSYKVLTGNEGVIRSVCDKVD 339          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.062e-16
Identity = 61/193 (31.61%), Postives = 91/193 (47.15%), Query Frame = -1
Query:  267 VPL--GRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF---DVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 830
            +PL  GRRD   +   +    LP   +++  +   F+++G+ D   LVAL G+H+ GR  C     RLY      + DP+L+   +  +   CP          +   D  TP V DN Y+ N+   KGLL  D +L       T  IV+   ++Q  FFK F  ++  +    PLTG++GEIR  C   N N
Sbjct:  145 IPLKTGRRDGLKSRTDMLESYLPDHNESISVVLEKFKSIGI-DTPGLVALLGSHSVGRTHCVKLVHRLYP-----EVDPSLNPDHVPHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQL--AHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKN 329          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER2_MAIZE (Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.812e-16
Identity = 61/188 (32.45%), Postives = 92/188 (48.94%), Query Frame = -1
Query:  273 VPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGG--NGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 830
            +P GR D   +N + + + L  P   L +L SSF   G++ + DLV LSGAHT GR+ C  F     D  +   P           LR  CP     +       DV TP+  D +Y+ N+     L  SD  L ++P  +TA +V D  +    +   F  +M++M +L+  TG+QG++R NCR +N
Sbjct:  155 MPSGRLDGTFSNASESVKFLVPPTSNLSDLASSFAVKGMSLE-DLVVLSGAHTVGRSHCSSFVSDRLDVPSDINP------ALAAFLRTRCPPNTTTSDDPTVMQDVVTPNAMDIQYYKNVLSHTVLFTSDAALLTSP--ETAKLVLDNAKIPGWWEDKFEKAMVKMASLEVKTGHQGQVRKNCRAIN 333          
The following BLAST results are available for this feature:
BLAST of CF832245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER2_SOLLC1.751e-1936.65Suberization-associated anionic peroxidase 2 OS=So... [more]
PER60_ARATH3.901e-1931.28Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=... [more]
PER65_ARATH5.095e-1933.33Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=... [more]
PERA_IPOBA4.313e-1836.13Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER8_ARATH8.134e-1730.65Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 ... [more]
PER44_ARATH8.134e-1731.05Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=... [more]
PER29_ARATH8.134e-1731.77Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]
PER42_ARATH1.062e-1631.61Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER2_MAIZE1.812e-1632.45Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832245 ID=CF832245; Name=CF832245; organism=Citrus sinensis; type=EST; length=836bp
TTTTTTTTTTTTTTTTTGAACCACAAACAAAAGTTTAATTAATCTACTTG
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCGAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGCAAGAGCTCTGTTTGC
CGTTCTGCTGTCTCTTCTTCCCAATGGAACTGCCCA
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