CF832245

Overview
NameCF832245
Unique NameCF832245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832245_ssr237 microsatellite CF832245_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:459..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER49_ARATH (Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.573e-44
Identity = 90/188 (47.87%), Postives = 122/188 (64.89%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W VPLGRRDSR+A+ + +N N+P P +T   + S F   GL D  DLVALSG+HT G ++C  FR RLY+ +  G PD TL+ +F   LR+ CP+ G   +L+  D+ +   FDN YF NL   KGLL SDQ LFS+    +  +V+ +  +Q  FF+ F  SMI+MGN+ PLTG+ GEIR NCR++N
Sbjct:  145 WVVPLGRRDSRSASLSQSNNNIPAPNNTFQTILSKFNRQGL-DITDLVALSGSHTIGFSRCTSFRQRLYNQSGNGSPDMTLEQSFAANLRQRCPKSGGDQILSVLDIISAASFDNSYFKNLIENKGLLNSDQVLFSS-NEKSRELVKKYAEDQGEFFEQFAESMIKMGNISPLTGSSGEIRKNCRKIN 330          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PERN_ARMRU (Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.683e-44
Identity = 97/190 (51.05%), Postives = 122/190 (64.21%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGA--DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W V LGR+D   AN++ AN NLP PF+ LD + + F  VGLN   D+VALSGAHTFG+A+C  F  RL++F   G PD TL+ T L  L+ +CP GGNG   A  D  + D FDN YF NL   KGLL SDQ LFS+  A   T  +VE + R+Q  FF++F  SMIRMG+L  + G  GE+R NCR +N
Sbjct:  142 WRVALGRKDGLVANQSSAN-NLPSPFEPLDAIIAKFAAVGLN-VTDVVALSGAHTFGQAKCDLFSNRLFNFTGAGTPDSTLETTLLSDLQTVCPIGGNGNKTAPLDRNSTDAFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKRLVEAYSRSQYLFFRDFTCSMIRMGSL--VNGASGEVRTNCRVIN 327          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER1_WHEAT (Peroxidase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.739e-43
Identity = 92/188 (48.94%), Postives = 119/188 (63.30%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W VPLGRRDS TA+ +LAN +LPGP  +  +L+++F    LN  +D+VALSGAHT G+AQC  FR R+Y        D  ++  F   L+  CPQ G    LAN D  TP+ FDN Y++NL  +KGLL SDQ LF+    D    V +F  N  AF   F T+MI+MGN+ PLTG QG+IRL+C +VN
Sbjct:  133 WTVPLGRRDSTTASASLANSDLPGPSSSRSQLEAAFLKKNLNT-VDMVALSGAHTIGKAQCSNFRTRIYG------GDTNINTAFATSLKANCPQSGGNTNLANLDTMTPNAFDNAYYTNLLSQKGLLHSDQVLFNNETTDNT--VRNFASNAAAFSSAFTTAMIKMGNIAPLTGTQGQIRLSCSKVN 311          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER59_ARATH (Peroxidase 59 OS=Arabidopsis thaliana GN=PER59 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 5.060e-43
Identity = 94/190 (49.47%), Postives = 121/190 (63.68%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGA--DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W V LGR+D   AN+  AN NLP PF+ LD + + F  V LN   D+VALSGAHTFG+A+C  F  RL++F   G PD TL+ + L  L+ +CP GGN  + A  D +T D FDN YF NL   KGLL SDQ LFS+  A   T  +VE + R+Q+ FF++F  +MIRMGN+    G  GE+R NCR +N
Sbjct:  142 WRVALGRKDGLVANQNSAN-NLPSPFEPLDAIIAKFVAVNLNIT-DVVALSGAHTFGQAKCAVFSNRLFNFTGLGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRTNCRVIN 327          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PERX_NICSY (Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.280e-42
Identity = 95/188 (50.53%), Postives = 120/188 (63.83%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W V LGRRDS TA++ LA  +LPGPFD L+ L SSF + GL+ + D+VALSGAHT G+AQC  FR R+Y  N T      +DA F    R+ CPQ G  G LA  D+ TP+ FDN YF NL  +KGLLQSDQ LF+  G  T  IV ++  +  AF  +F  +MI+MG++ PL+G  G IR  C  VN
Sbjct:  144 WTVKLGRRDSTTASKTLAETDLPGPFDPLNRLISSFASKGLSTR-DMVALSGAHTIGQAQCFLFRDRIYS-NGTD-----IDAGFASTRRRQCPQEGENGNLAPLDLVTPNQFDNNYFKNLIQKKGLLQSDQVLFN--GGSTDNIVSEYSNSARAFSSDFAAAMIKMGDISPLSGQNGIIRKVCGSVN 322          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER72_ARATH (Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.280e-42
Identity = 90/188 (47.87%), Postives = 119/188 (63.30%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W VPLGRRD+R A+ + +N ++P P +T   + + F+  GL D +DLV+LSG+HT G ++C  FR RLY+ +  GKPD TL   +   LR+ CP+ G    L   D  TP  FDN YF NL   KGLL SD+ LF T    +  +VE +  NQ AFF+ F  SM++MGN+ PLTG +GEIR  CRRVN
Sbjct:  148 WEVPLGRRDARGASLSGSNNDIPAPNNTFQTILTKFKRQGL-DLVDLVSLSGSHTIGNSRCTSFRQRLYNQSGNGKPDMTLSQYYATLLRQRCPRSGGDQTLFFLDFATPFKFDNHYFKNLIMYKGLLSSDEILF-TKNKQSKELVELYAENQEAFFEQFAKSMVKMGNISPLTGAKGEIRRICRRVN 333          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER15_ARATH (Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.280e-42
Identity = 85/190 (44.74%), Postives = 122/190 (64.21%), Query Frame = -1
Query:  267 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 836
            W VPLGRRDS +A+ + +N N+P P +T + + + F N GL D  D+VALSG+HT G ++C  FR RLY+ +  G PD TL+ ++   LR+ CP+ G    L+  D+ +   FDN YF NL    GLL SD+ LFS+    +  +V+ +  +Q  FF+ F  SMI+MGN+ PLTG+ GEIR NCR++N +
Sbjct:  151 WMVPLGRRDSTSASLSGSNNNIPAPNNTFNTIVTRFNNQGL-DLTDVVALSGSHTIGFSRCTSFRQRLYNQSGNGSPDRTLEQSYAANLRQRCPRSGGDQNLSELDINSAGRFDNSYFKNLIENMGLLNSDEVLFSS-NEQSRELVKKYAEDQEEFFEQFAESMIKMGNISPLTGSSGEIRKNCRKINNS 338          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER14_ARATH (Peroxidase 14 OS=Arabidopsis thaliana GN=PER14 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.594e-42
Identity = 88/190 (46.32%), Postives = 120/190 (63.16%), Query Frame = -1
Query:  267 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 836
            W VPLGRRDS TA+RA  N++LP P +  D +   F N GLN   DLVALSG+HT G ++C  FR RLY+ + +G PD TL+ ++   LR+ CP+ G    L+  D+ +   FDN YF NL    GLL SDQ LFS+    +  +V+ +  +Q  FF+ F  SMI+MG + PLTG+ GEIR  CR++N +
Sbjct:  150 WTVPLGRRDSATASRAKPNKDLPEPDNLFDTIFLRFSNEGLN-LTDLVALSGSHTIGFSRCTSFRQRLYNQSGSGSPDTTLEKSYAAILRQRCPRSGGDQNLSELDINSAGRFDNSYFKNLIENMGLLNSDQVLFSS-NEQSRELVKKYAEDQEEFFEQFAESMIKMGKISPLTGSSGEIRKKCRKINNS 337          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER5_ARATH (Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.628e-41
Identity = 94/189 (49.74%), Postives = 123/189 (65.08%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQN-LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            WAV +GRRDS  A +ALAN   LPG  DTLD+L   F   GLN + DLVALSGAHT G++QC  FR RLY+ ++       +DA F    ++ CP  G  G LA  D+ TP+ FDN Y+ NL  +KGLL +DQ LF + GA T  IV ++ +N++ F  +F T+MI+MGN++PLTG+ GEIR  C  VN
Sbjct:  141 WAVKVGRRDSTAAFKALANSGELPGFKDTLDQLSGLFSKKGLNTR-DLVALSGAHTIGQSQCFLFRDRLYENSSD------IDAGFASTRKRRCPTVGGDGNLAALDLVTPNSFDNNYYKNLMQKKGLLVTDQVLFGS-GASTDGIVSEYSKNRSKFAADFATAMIKMGNIEPLTGSNGEIRKICSFVN 321          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER2_ORYSJ (Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.776e-41
Identity = 94/190 (49.47%), Postives = 118/190 (62.11%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQ--GGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W V LGRRDS TAN + AN +LP P  +L EL  +F   GL D  D+VALSGAHT G+AQCQ FR RLY+  N       +D++F   L+  CP+  G     LA  D TTP+ FD+ Y++NL   KGLL SDQ LF+  G  T   V +F  N  AF   F  +M++MGN+ PLTG QG+IRLNC +VN
Sbjct:  135 WTVLLGRRDSTTANESQANTDLPAPSSSLAELIGNFSRKGL-DVTDMVALSGAHTIGQAQCQNFRDRLYNETN-------IDSSFATALKANCPRPTGSGDSNLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLFN--GGSTDNTVRNFSSNTAAFNSAFTAAMVKMGNISPLTGTQGQIRLNCSKVN 314          
The following BLAST results are available for this feature:
BLAST of CF832245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER49_ARATH1.573e-4447.87Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=... [more]
PERN_ARMRU2.683e-4451.05Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 S... [more]
PER1_WHEAT1.739e-4348.94Peroxidase OS=Triticum aestivum PE=2 SV=1[more]
PER59_ARATH5.060e-4349.47Peroxidase 59 OS=Arabidopsis thaliana GN=PER59 PE=... [more]
PERX_NICSY3.280e-4250.53Lignin-forming anionic peroxidase OS=Nicotiana syl... [more]
PER72_ARATH3.280e-4247.87Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=... [more]
PER15_ARATH3.280e-4244.74Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=... [more]
PER14_ARATH5.594e-4246.32Peroxidase 14 OS=Arabidopsis thaliana GN=PER14 PE=... [more]
PER5_ARATH1.628e-4149.74Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 ... [more]
PER2_ORYSJ2.776e-4149.47Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PR... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832245 ID=CF832245; Name=CF832245; organism=Citrus sinensis; type=EST; length=836bp
TTTTTTTTTTTTTTTTTGAACCACAAACAAAAGTTTAATTAATCTACTTG
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCGAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGCAAGAGCTCTGTTTGC
CGTTCTGCTGTCTCTTCTTCCCAATGGAACTGCCCA
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