CF832245

Overview
NameCF832245
Unique NameCF832245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832245_ssr237 microsatellite CF832245_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:459..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER4_VITVI (Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.207e-36
Identity = 84/190 (44.21%), Postives = 118/190 (62.11%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGV--LANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W V LGRRDS+TA+ + AN N+P P  +L  L S F+  GL+ + D+VALSGAHT G+A+C  FR R+Y+  N       +D++F +  +  CP     G   LA  D+ TP  FDN Y+ NL  +KGLL SDQ L++  G  T + V+ +  N   F  +FV  MI+MG++ PLTG++GEIR +C +VN
Sbjct:  142 WDVKLGRRDSKTASLSGANNNIPPPTSSLSNLISKFQAQGLSTR-DMVALSGAHTIGQARCTSFRARIYNETN-------IDSSFAKTRQASCPSASGSGDNNLAPLDLQTPTTFDNYYYKNLINQKGLLHSDQVLYN--GGSTDSTVKTYVNNPKTFTSDFVAGMIKMGDITPLTGSEGEIRKSCGKVN 321          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER68_ARATH (Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.587e-36
Identity = 87/191 (45.55%), Postives = 118/191 (61.78%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQN-LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQ--GGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W+V LGRRDS TA+ + AN   LP P  TLD L + FR  GL+ + D+VALSGAHT G+A+C  FR R+Y+  N       +D +F    R+ CP   G      A  D+ TP+ FD  YF  L   +GLL SDQ LF+  G  T +IV  + R+  AF+++FV +MI+MG++ PLTG+ G+IR +CRR N
Sbjct:  145 WSVKLGRRDSITASFSTANSGVLPPPTSTLDNLINLFRANGLSPR-DMVALSGAHTIGQARCVTFRSRIYNSTN-------IDLSFALSRRRSCPAATGSGDNNAAILDLRTPEKFDGSYFMQLVNHRGLLTSDQVLFN--GGSTDSIVVSYSRSVQAFYRDFVAAMIKMGDISPLTGSNGQIRRSCRRPN 325          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER10_ARATH (Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.824e-36
Identity = 83/187 (44.39%), Postives = 112/187 (59.89%), Query Frame = -1
Query:  285 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDAT--FLQQLRKLCPQ-GGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNC 836
            W VPLGRRDS TA+   AN NLP PF+ L+ + + F  +GL D  D+V LSGAHT G AQC   + RL++F  +G+PDP L A+   L +L+  CP    +   LA  D  +   FDN Y+ NL    GLL SDQ L + P A  AA+V+ +  N   F ++F  SM++MGN+  +TG+ G IR  C
Sbjct:  163 WPVPLGRRDSLTASEQAANTNLPSPFEALENITAKFVTLGL-DLKDVVVLSGAHTIGFAQCFVIKHRLFNFKGSGQPDPNLAASSALLSKLKDTCPNVDSSDSKLAALDAASSVKFDNAYYVNLMNNIGLLDSDQTLMTDPTA--AALVKSYSENPYLFSRDFAVSMVKMGNIGVMTGSDGVIRGKC 346          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER66_MAIZE (Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.022e-35
Identity = 85/188 (45.21%), Postives = 115/188 (61.17%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W V LGRRDS TA+ A    +LP P  +L +L S++    LN   D+VALSGAHT G+AQC  F   +Y+       D  +++ F   LR  CP+ G+   LA  D TTP+ FDN Y++NL  +KGLL SDQELF++   D+   V  F  + +AF   F T+M++MGNL P TG QG+IR +C +VN
Sbjct:  144 WTVLLGRRDS-TASFAGQTSDLPPPTSSLGQLLSAYNKKNLNPT-DMVALSGAHTIGQAQCSSFNDHIYN-------DTNINSAFAASLRANCPRAGSTA-LAPLDTTTPNAFDNAYYTNLLSQKGLLHSDQELFNSGSTDST--VRSFASSTSAFNSAFATAMVKMGNLSPQTGTQGQIRRSCWKVN 319          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PERP7_BRARA (Peroxidase P7 OS=Brassica rapa PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.335e-35
Identity = 81/190 (42.63%), Postives = 119/190 (62.63%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGG--VLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W V +GRRD++TA++A AN N+P P  +L +L SSF  VGL+ + D+VALSGAHT G+++C  FR R+Y+  N       ++A F    ++ CP+    G   LA  D+ +   FDN YF NL  ++GLL SDQ LF+  G  T +IV  +  + ++F  +F  +MI+MG++ PLTG+ GEIR  C + N
Sbjct:  117 WNVKVGRRDAKTASQAAANSNIPAPSMSLSQLISSFSAVGLSTR-DMVALSGAHTIGQSRCVNFRARVYNETN-------INAAFATLRQRSCPRAAGSGDANLAPLDINSATSFDNSYFKNLMAQRGLLHSDQVLFN--GGSTDSIVRGYSNSPSSFNSDFAAAMIKMGDISPLTGSSGEIRKVCGKTN 296          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER71_ARATH (Peroxidase 71 OS=Arabidopsis thaliana GN=PER71 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.517e-34
Identity = 85/189 (44.97%), Postives = 111/189 (58.73%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKP-DPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W VP GRRD R +  + AN NLPGP D++   +  F  +GLN + DLV L G HT G A C  FR RL  FN TG+  DPT+D TFL QL+  CPQ G+G V  + D  +   +D  Y++NL   +G+LQSDQ L++ P   T  IV+     ++ F   F  SM+RM N+  +TG  GEIR  C  VN
Sbjct:  146 WQVPTGRRDGRVSLASNAN-NLPGPRDSVAVQQQKFSALGLNTR-DLVVLVGGHTIGTAGCGVFRNRL--FNTTGQTADPTIDPTFLAQLQTQCPQNGDGSVRVDLDTGSGSTWDTSYYNNLSRGRGVLQSDQVLWTDPA--TRPIVQQLMAPRSTFNVEFARSMVRMSNIGVVTGANGEIRRVCSAVN 328          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.293e-34
Identity = 87/192 (45.31%), Postives = 107/192 (55.73%), Query Frame = -1
Query:  264 WAVPLGRRDSRT-ANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 836
            +AVPLGRRDS   A++     NLP PF    +L + F N  LN   DLVALSG HT G A C  F  RLY        DPT++  F   L++ CP   +     N D+ +PDVFDNKY+ +L  R+GL  SDQ+LF      T  IVE F  +Q  FF  F  +MI+MG +  LTG QGEIR NC   N  S
Sbjct:  160 YAVPLGRRDSLAFASQETTLNNLPPPFFNASQLIADFANRNLNIT-DLVALSGGHTIGIAHCPSFTDRLYP-----NQDPTMNQFFANSLKRTCPTANSSNTQVN-DIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKR--TRGIVESFAIDQQLFFDYFTVAMIKMGQMSVLTGTQGEIRSNCSARNTQS 342          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER42_MAIZE (Peroxidase 42 OS=Zea mays GN=PER42 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.249e-33
Identity = 82/190 (43.16%), Postives = 108/190 (56.84%), Query Frame = -1
Query:  267 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 836
            W V LGRRDS T +      +LP P  +L  L +++    L D  D+VALSGAHT G+AQC  F G +Y+       D  ++A F   L+  CP  G G  LA  D  TP VF N Y+ NL  +KGLL SDQELF+    D+   V +F  +  AF   F  +M++MGNL PLTG  G+IRL C ++N +
Sbjct:  144 WTVLLGRRDS-TGSFPSQTSDLPPPTSSLQALLAAYSKKNL-DATDMVALSGAHTIGQAQCSSFNGHIYN-------DTNINAAFATSLKANCPMSG-GSSLAPLDTMTPTVFGNDYYKNLLSQKGLLHSDQELFNNGSTDST--VSNFASSSAAFTSAFTAAMVKMGNLGPLTGTSGQIRLTCWKLNSS 321          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER45_ARATH (Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.631e-33
Identity = 76/188 (40.43%), Postives = 114/188 (60.64%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            + V LGRRD R + +A     LP P   L++L   F   GL+ + D++ALSGAHT G A C     R+Y+F+ T + DP+++  ++ QL+++CP G +  +  N D T+P  FDN YF NL+  KGL  SDQ LF+     + + V  F  ++ AF + F+T++ ++G +  LTGN GEIR +C RVN
Sbjct:  141 YPVELGRRDGRISTKASVQSQLPQPEFNLNQLNGMFSRHGLS-QTDMIALSGAHTIGFAHCGKMSKRIYNFSPTTRIDPSINRGYVVQLKQMCPIGVDVRIAINMDPTSPRTFDNAYFKNLQQGKGLFTSDQILFT--DQRSRSTVNSFANSEGAFRQAFITAITKLGRVGVLTGNAGEIRRDCSRVN 325          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER40_ARATH (Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 4.747e-33
Identity = 82/190 (43.16%), Postives = 115/190 (60.53%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLD-ATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQEL-FSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W V +GR+DSRTA++  A   LP P  T+  L S+F+N+GL+ + D+VALSG HT G+A+C  F  RL     TG+P    D   FL+ L++LC   G    +   D+ TP  FDN+Y+ NL   +GLL SDQ L    PG  T AIVE +  +Q+ FF++F  +M++MG +    G+  EIR NCR +N
Sbjct:  165 WEVEVGRKDSRTASKQAATNGLPSPNSTVSTLISTFQNLGLS-QTDMVALSGGHTLGKARCTSFTARLQPLQ-TGQPANHGDNLEFLESLQQLCSTVGPSVGITQLDLVTPSTFDNQYYVNLLSGEGLLPSDQALAVQDPG--TRAIVETYATDQSVFFEDFKNAMVKMGGIP--GGSNSEIRKNCRMIN 348          
The following BLAST results are available for this feature:
BLAST of CF832245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER4_VITVI1.207e-3644.21Peroxidase 4 OS=Vitis vinifera GN=GSVIVT0002396700... [more]
PER68_ARATH4.587e-3645.55Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=... [more]
PER10_ARATH7.824e-3644.39Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=... [more]
PER66_MAIZE1.022e-3545.21Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1[more]
PERP7_BRARA1.335e-3542.63Peroxidase P7 OS=Brassica rapa PE=1 SV=3[more]
PER71_ARATH2.517e-3444.97Peroxidase 71 OS=Arabidopsis thaliana GN=PER71 PE=... [more]
PER12_ARATH4.293e-3445.31Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PER42_MAIZE1.249e-3343.16Peroxidase 42 OS=Zea mays GN=PER42 PE=2 SV=1[more]
PER45_ARATH1.631e-3340.43Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=... [more]
PER40_ARATH4.747e-3343.16Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832245 ID=CF832245; Name=CF832245; organism=Citrus sinensis; type=EST; length=836bp
TTTTTTTTTTTTTTTTTGAACCACAAACAAAAGTTTAATTAATCTACTTG
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCGAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGCAAGAGCTCTGTTTGC
CGTTCTGCTGTCTCTTCTTCCCAATGGAACTGCCCA
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