CF832245

Overview
NameCF832245
Unique NameCF832245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832245_ssr237 microsatellite CF832245_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:459..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER19_ARATH (Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.205e-30
Identity = 79/187 (42.25%), Postives = 107/187 (57.22%), Query Frame = -1
Query:  282 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCP-QGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQ-GEIRLNCR 836
            + V  GR D + +       N+P    T+D+L   F + GL  + +LV LSG+HT G A C+ F GRLYD+  T +PDP+LD   L++LR  CP  GG+ GV+   D TTP VFDN YF+ L    GLL SDQ LF  P   T  I  +  R++  F K F  +M +MG++    G + GEIR +CR
Sbjct:  160 YQVKKGRWDGKRSTAKNVPPNIPRSNSTVDQLIKLFASKGLTVE-ELVVLSGSHTIGFAHCKNFLGRLYDYKGTKRPDPSLDQRLLKELRMSCPFSGGSSGVVLPLDATTPFVFDNGYFTGLGTNMGLLGSDQALFLDP--RTKPIALEMARDKQKFLKAFGDAMDKMGSIGVKRGKRHGEIRTDCR 343          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER20_ARATH (Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.880e-30
Identity = 85/192 (44.27%), Postives = 110/192 (57.29%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFN--NTGKPDP-TLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPG-ADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W V LGRRDS  A+ A ANQ +P P  +LD L  +F+  GLN + DL+ALSGAHT G+A+C  F+ R+   N   T   D     +TF + L   C        L+  D+ TP  FDN YF NL   +GLL SD  L S     +    V ++  NQ+ FF +FV SM++MGN+  LTG +GEIR NCR VN
Sbjct:  145 WEVLLGRRDSLKASFAGANQFIPAPNSSLDSLIINFKQQGLNIQ-DLIALSGAHTIGKARCVSFKQRIVQPNMEQTFYVDEFRRHSTFRRVLGSQCKDSSRDNELSPLDIKTPAYFDNHYFINLLEGRGLLISDNVLVSEDHEGEIFQKVWEYAVNQDLFFIDFVESMLKMGNINVLTGIEGEIRENCRFVN 335          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER5_VITVI (Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.912e-30
Identity = 74/187 (39.57%), Postives = 103/187 (55.08%), Query Frame = -1
Query:  273 VPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGG-NGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 830
            VP GRRD R +  + A+ NLP P  T+D+L   F N GL    ++V LSGAHT GR+ C  F  RLY+FN T   DPTLD  +   L+  CPQG  N  ++   + ++P + D  Y+ ++   +GL  SDQ L +     TA  V     N   +   F ++M++MG L  L G  G+IR NCR +N
Sbjct:  178 VPAGRRDGRISLASEASTNLPPPTFTVDQLTQFFSNKGLTQD-EMVTLSGAHTIGRSHCSSFSNRLYNFNGTSGQDPTLDPQYAASLKTQCPQGSTNTNLVVPMNPSSPSITDVGYYVDVLRNRGLFTSDQTLLT--DTTTATQVRQNAGNPFLWKNKFASAMVKMGQLGVLIGEAGQIRANCRVIN 361          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER27_ARATH (Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.415e-30
Identity = 76/188 (40.43%), Postives = 99/188 (52.66%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W V  GRRD R +N  +   NLP PFD + +L S FR+ GLN+K DLV LSG HT G   C     RLY+F   G  DP+LD+ +  +LRK C        L   D  +   FD  YF+ +  R+GL QSD  L        A +++    + + FF +F  SM++MG    LTG  GEIR  CR  N
Sbjct:  139 WEVETGRRDGRVSN--INEVNLPSPFDNITKLISDFRSKGLNEK-DLVILSGGHTIGMGHCPLLTNRLYNFTGKGDSDPSLDSEYAAKLRKKCKPTDTTTAL-EMDPGSFKTFDLSYFTLVAKRRGLFQSDAALLDN-SKTRAYVLQQIRTHGSMFFNDFGVSMVKMGRTGVLTGKAGEIRKTCRSAN 321          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER51_ARATH (Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.429e-29
Identity = 73/188 (38.83%), Postives = 107/188 (56.91%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            +AV LGRRD  +++ +     LP P   L++L + F   GL+   D++ALSGAHT G A C     RLY+FN T   DPT++  ++ +L+  CPQ  +  V  N D  TP  FDN Y+ NL+  KGL  SDQ LF+   + +   V+ +  N   F + F++SMI++G +   TG+ G IR +C   N
Sbjct:  145 YAVELGRRDGLSSSASSVTGKLPKPTFDLNQLNALFAENGLSPN-DMIALSGAHTLGFAHCTKVFNRLYNFNKTNNVDPTINKDYVTELKASCPQNIDPRVAINMDPNTPRQFDNVYYKNLQQGKGLFTSDQVLFT--DSRSKPTVDLWANNGQLFNQAFISSMIKLGRVGVKTGSNGNIRRDCGAFN 329          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER73_ARATH (Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.867e-29
Identity = 76/188 (40.43%), Postives = 103/188 (54.79%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            +AV LGR D   +  A  N NLPGP + + EL   F    L  + D++ALS AHT G A C     R+Y+FN T   DPTL+  + ++L+  CP+  +  +  N D TTP  FDN YF NL+  KGL  SDQ LF+     +   V D+ +N  AF K FVT+M ++G +   T   G IR +C   N
Sbjct:  145 YAVELGRFDGLVSTAASVNGNLPGPNNKVTELNKLFAKNKLTQE-DMIALSAAHTLGFAHCGKVFNRIYNFNLTHAVDPTLNKAYAKELQLACPKTVDPRIAINMDPTTPRQFDNIYFKNLQQGKGLFTSDQVLFT--DGRSKPTVNDWAKNSVAFNKAFVTAMTKLGRVGVKTRRNGNIRRDCGAFN 329          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER61_ARATH (Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.438e-29
Identity = 75/190 (39.47%), Postives = 105/190 (55.26%), Query Frame = -1
Query:  267 GRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGG-----VLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 821
            GRRD  T N    +  LP P  ++DE  + F++ GL D LD+  L GAH+ G+  C +   RLY+F NTGKPDPT++ T + QLR LCP     G     V  N D  + + F + Y+S +     +L+ DQEL +    D+  I ++F      F K+F  +M RMG++  LTG  GEIR +CR  N N
Sbjct:  153 GRRDGGTLNADAVD--LPSPSISVDESLAYFKSKGL-DVLDMTTLLGAHSMGKTHCSYVVDRLYNFKNTGKPDPTMNTTLVSQLRYLCPPRTQKGQTDPLVYLNPDSGSSNRFTSSYYSRVLSHNAVLRVDQELLNND--DSKEITQEFASGFEDFRKSFALAMSRMGSINVLTGTAGEIRRDCRVTNAN 337          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER50_ARATH (Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.695e-28
Identity = 73/186 (39.25%), Postives = 103/186 (55.38%), Query Frame = -1
Query:  273 VPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 830
            V LGR D  ++  A     LP P D +++L S F   GL+   D++ALSGAHT G A C     R+Y FN T K DPT++  ++ +L+  CP+  +  V  N D TTP  FDN Y+ NL+  KGL  SDQ LF+     +   V+ +  N   F + F+ SMI++G +   TG+ G IR +C   N
Sbjct:  147 VELGRLDGLSSTAASVGGKLPHPTDDVNKLTSLFAKNGLSLN-DMIALSGAHTLGFAHCTKVFNRIYTFNKTTKVDPTVNKDYVTELKASCPRNIDPRVAINMDPTTPRQFDNVYYKNLQQGKGLFTSDQVLFT--DRRSKPTVDLWANNGQLFNQAFINSMIKLGRVGVKTGSNGNIRRDCGAFN 329          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER56_ARATH (Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.005e-28
Identity = 72/188 (38.30%), Postives = 94/188 (50.00%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            W V  GRRD    N   A  NLP PF+ +  L + F++ GL DK DLV LSG HT G   C     RLY+F   G  DP LD  +  +LR  C        L   D  +   FD  YF  +  R+GL QSD  L        + +++    + + FFK+F  SM++MG +  LTG  GE+R  CR VN
Sbjct:  145 WEVETGRRDGLVTNITEALLNLPSPFNNISSLITQFQSKGL-DKKDLVVLSGGHTIGNGHCPQITNRLYNFTGKGDSDPNLDTEYAVKLRGKCKPTDTTTAL-EMDPGSFKTFDESYFKLVSQRRGLFQSDAALLDNQ-ETKSYVLKSLNSDGSTFFKDFGVSMVKMGRIGVLTGQVGEVRKKCRMVN 329          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER30_ARATH (Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.024e-27
Identity = 72/186 (38.71%), Postives = 99/186 (53.23%), Query Frame = -1
Query:  285 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLR-KLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDF-GRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNC 836
            W+VP GRRD R +N+  A  N+P P      L+  F+N GLN K DLV LSGAHT G + C     RLY+F+ T K DP+LD+ +   L+   C    +   +   D  +   FD  Y+  +  R+GL QSD  L  T  + T  ++ D    ++  FFK F  SM +MG +K  TG+ G IR  C
Sbjct:  142 WSVPTGRRDGRISNKTEATNNIPPPTSNFTTLQRLFKNQGLNLK-DLVLLSGAHTIGVSHCSSMNTRLYNFSTTVKQDPSLDSQYAANLKANKCKSLNDNSTILEMDPGSSRSFDLSYYRLVLKRRGLFQSDSAL--TTNSATLKVINDLVNGSEKKFFKAFAKSMEKMGRVKVKTGSAGVIRTRC 324          
The following BLAST results are available for this feature:
BLAST of CF832245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER19_ARATH2.205e-3042.25Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=... [more]
PER20_ARATH2.880e-3044.27Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=... [more]
PER5_VITVI4.912e-3039.57Peroxidase 5 OS=Vitis vinifera GN=GSVIVT0003715900... [more]
PER27_ARATH6.415e-3040.43Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=... [more]
PER51_ARATH1.429e-2938.83Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=... [more]
PER73_ARATH1.867e-2940.43Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=... [more]
PER61_ARATH2.438e-2939.47Probable peroxidase 61 OS=Arabidopsis thaliana GN=... [more]
PER50_ARATH2.695e-2839.25Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=... [more]
PER56_ARATH6.005e-2838.30Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=... [more]
PER30_ARATH1.024e-2738.71Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832245 ID=CF832245; Name=CF832245; organism=Citrus sinensis; type=EST; length=836bp
TTTTTTTTTTTTTTTTTGAACCACAAACAAAAGTTTAATTAATCTACTTG
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCGAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGCAAGAGCTCTGTTTGC
CGTTCTGCTGTCTCTTCTTCCCAATGGAACTGCCCA
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