CF832245

Overview
NameCF832245
Unique NameCF832245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832245_ssr237 microsatellite CF832245_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:459..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER2_HORVU (Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.523e-26
Identity = 75/173 (43.35%), Postives = 92/173 (53.18%), Query Frame = -1
Query:  228 LKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLAN-FDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNIATRSSSSEGD 743
            L SSF N  L D  DLV+LSGAHTFG A C  F  R    ++  + +P +D  F   LR  C      G L    DV TPDVFDNKY+ +L  R+GL +SDQ L   P   T  +   F  NQ AFF+ F  SM +M N+  LTG +GEIR NC   N     +   S + GD
Sbjct:    3 LISSFANRSL-DVADLVSLSGAHTFGVAHCPAFEDR----SSRVRHNPAIDGKFATALRNKCSGDNPSGTLTQKLDVRTPDVFDNKYYFDLIARQGLFKSDQGLIDHP--TTKRMATRFSLNQGAFFEQFARSMTKMSNMDILTGTKGEIRNNCAVPNRRVRTSRPPSPARGD 168          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER1_ARATH (Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.523e-26
Identity = 73/188 (38.83%), Postives = 101/188 (53.72%), Query Frame = -1
Query:  285 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELF----STPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNC 836
            W VPLGRRD R +    A  NLP PF  +  LK +F N GLN K DLV LSG HT G + C     RLY+F   G  DP+++ +++++L++ CP       L N D  +   FD  YF  +  +KGL  SD  L     +     T AI+       ++F K+F  SM+++G ++ LTG  GEIR  C
Sbjct:  139 WPVPLGRRDGRISKLNDALLNLPSPFADIKTLKKNFANKGLNAK-DLVVLSGGHTIGISSCALVNSRLYNFTGKGDSDPSMNPSYVRELKRKCPPTDFRTSL-NMDPGSALTFDTHYFKVVAQKKGLFTSDSTLLDDIETKNYVQTQAILPPV---FSSFNKDFSDSMVKLGFVQILTGKNGEIRKRC 321          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER1_ORYSJ (Peroxidase 1 OS=Oryza sativa subsp. japonica GN=PRX74 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.303e-26
Identity = 78/194 (40.21%), Postives = 102/194 (52.58%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQN--LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDF---NNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRN-QNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            WAVPLGRRD R +   +AN+   LP P     EL   F    L+ K DLV LS  HT G + C  F  RLY+F   +N    DPTL+  ++ +LR  C    +   L   D  +   FD  YF N+  R+GL  SD EL  T G   A +    G   ++ FF +F  SM++MG ++ LTG+QGEIR  C  VN
Sbjct:  138 WAVPLGRRDGRVS---IANETDQLPPPTANFTELTQMFAAKNLDLK-DLVVLSAGHTIGTSHCFSFTDRLYNFTGLDNAHDIDPTLELQYMARLRSKCTSLQDNTTLVEMDPGSFKTFDLGYFKNVAKRRGLFHSDGELL-TNGFTRAYVQRHAGGGYKDEFFADFAASMVKMGGVEVLTGSQGEIRKKCNVVN 326          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PERX_LUPPO (Peroxidase (Fragment) OS=Lupinus polyphyllus PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.340e-26
Identity = 66/167 (39.52%), Postives = 89/167 (53.29%), Query Frame = -1
Query:  273 PGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGV-LANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 770
            PGP   L  L + F   GL    DL  LSG HT G+++CQFF+ R+Y+       D  +D  F    +  CP    G   LA  D  TP+ FDN Y+ +L   +GLL SDQ LF+    DT  +V  +  N   FF +F  ++++M  + PLTG  GEIR NCR +N
Sbjct:    2 PGPSSDLTTLTTKFAAKGLTPS-DLTVLSGGHTIGQSECQFFKTRIYN-------DTNIDTNFATSRQANCPFSAGGETNLAPLDSLTPNRFDNNYYKDLVSNRGLLHSDQVLFNGGSQDT--LVRTYSTNNVKFFSDFAAAIVKMSKISPLTGIAGEIRKNCRVIN 158          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER26_ARATH (Probable peroxidase 26 OS=Arabidopsis thaliana GN=PER26 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.340e-26
Identity = 68/188 (36.17%), Postives = 102/188 (54.26%), Query Frame = -1
Query:  273 GRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGG-----VLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 821
            GRRD  T+++   +  LP P  + D+  S F++ GLN  LD+  L G+H+ GR  C +   RLY++N TGKP PT++  FL ++ K CP     G     V  N D  +   F + ++S +   K +L+ DQ+L      DT  I ++F      F K+F  SM +MG +  LT  +GEIR +CR +N
Sbjct:  153 GRRDGLTSDKQTVD--LPSPSISWDQAMSYFKSRGLN-VLDMATLLGSHSMGRTHCSYVVDRLYNYNKTGKPSPTMNKYFLSEMAKQCPPRTRKGQTDPLVYLNPDSGSNHSFTSSFYSRILSNKSVLEVDQQLLYND--DTKQISKEFSEGFEDFRKSFALSMSKMGAINVLTKTEGEIRKDCRHIN 335          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER63_ARATH (Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.252e-25
Identity = 73/189 (38.62%), Postives = 105/189 (55.56%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF-DVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            + + LGRRDSRT+  +L +  LP P   + +L   F + G + + ++VALSGAHT G + C+ F  R+   N+TG      +  F   L+K C    N   ++ F DV TP+ FDN YF N+    GLL+SD  LFS P   T   VE + R+Q+ FF +F  +M ++     LTG +GEIR  C  +N
Sbjct:  148 YEISLGRRDSRTSKSSLVSDLLPLPSMQISKLIDQFSSRGFSVQ-EMVALSGAHTIGFSHCKEFTNRVNPNNSTG-----YNPRFAVALKKACSNSKNDPTISVFNDVMTPNKFDNMYFQNIPKGLGLLESDHGLFSDP--RTRPFVELYARDQSRFFNDFAGAMQKLSLHGVLTGRRGEIRRRCDAIN 328          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER7_ARATH (Peroxidase 7 OS=Arabidopsis thaliana GN=PER7 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.084e-24
Identity = 72/194 (37.11%), Postives = 103/194 (53.09%), Query Frame = -1
Query:  264 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFK-NFVTSMIRMGNLKPLTGNQ--GEIRLNCRRVNGNS 836
            W    GRRDS+ +  A   + +P     +  L  +F++ GLN  LDLV LSGAHT G+A C   + RLY++N T   DP++DA +   L++ C          + D  TP VFDN+Y+ NL+   G+L +DQEL   P   TA +V+ F       F+  F  SM ++ N+  LTG    GEIR  C + N  +
Sbjct:  162 WPNVYGRRDSKHSY-ARDVEKVPSGRRDVTALLETFQSYGLN-VLDLVVLSGAHTIGKASCGTIQSRLYNYNATSGSDPSIDAKYADYLQRRCRWASE---TVDLDPVTPAVFDNQYYINLQKHMGVLSTDQELVKDP--RTAPLVKTFAEQSPQIFRQQFAVSMAKLVNVGVLTGEDRVGEIRKVCSKSNSRA 348          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER31_ARATH (Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.999e-23
Identity = 69/185 (37.30%), Postives = 102/185 (55.14%), Query Frame = -1
Query:  273 LGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF-DVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 824
            LGRRDSRT+  +L    LP P   + ++   F + G   + ++VALSGAH+ G + C+ F GR+   NNTG      +  F   L+K C        ++ F D+ TP+ FDN Y+ NL+   GLL+SD  L+S P   T   V+ + +NQ+ FFK+F  +M ++      TG +GEIR  C  +N
Sbjct:  141 LGRRDSRTSKSSLLTDLLPLPSTPISKIIQQFESKGFTVQ-EMVALSGAHSIGFSHCKEFVGRV-GRNNTG-----YNPRFAVALKKACANYPKDPTISVFNDIMTPNKFDNMYYQNLKKGLGLLESDHGLYSDP--RTRYFVDLYAKNQDLFFKDFAKAMQKLSLFGIQTGRRGEIRRRCDAIN 316          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER24_ARATH (Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.999e-23
Identity = 76/193 (39.38%), Postives = 98/193 (50.78%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGG---NGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLT-GNQ-GEIRLNCRRVN 836
            W V  GR D R +    A ++LP        L+  F    L D +DLVALSGAHT G A C  F  RL +F   G  DP+L+ ++   L+  C       N   +   D T P  FD+ YF +L   KGL  SD  L + P   +AA +    +N  AF   F  SMI+M ++K LT G+Q GEIR NCR VN
Sbjct:  162 WNVFTGRVDGRVSLATEAARDLPSAGANFTTLQKLFAESDL-DVVDLVALSGAHTIGIAHCGVFGRRLLNFTGKGDTDPSLNPSYASFLKSECSDKSLRLNPSAVVGMDPTGPLAFDSGYFVSLLKNKGLFTSDAALLTDP---SAAHIASVFQNSGAFLAQFGRSMIKMSSIKVLTLGDQGGEIRKNCRLVN 350          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER1_MAIZE (Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.999e-23
Identity = 78/212 (36.79%), Postives = 108/212 (50.94%), Query Frame = -1
Query:  216 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNN---TGKPDPTLDATFLQQLRKLCPQGGNGG--VLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNIATRSSSSEGDLVSS 836
            + VP GRRD R +N A    +LP P  T   L   F+   L+ + D+V LSGAHT GR+ C  F  R+++ +    T   D  L  ++ Q LR LCP        +    D  TP+V DN Y+  L    GL  SD +L   P    AA+V  F  N+  + + F  +M++MG ++  TG  GE+RLNC    G  N +  SSSS  +L SS
Sbjct:  151 YQVPAGRRDGRVSN-ATETVDLPPPTSTAQSLTDLFKAKELSVE-DMVVLSGAHTVGRSFCASFFKRVWNTSTNPATAIVDAGLSPSYAQLLRALCPSNTTQTTPITTAMDPGTPNVLDNNYYKLLPRGMGLFFSDNQLRVNP--QMAALVSSFASNETLWKEKFAAAMVKMGRIQVQTGTCGEVRLNC----GVVNPSLYSSSSAVELGSS 354          
The following BLAST results are available for this feature:
BLAST of CF832245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER2_HORVU2.523e-2643.35Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV... [more]
PER1_ARATH2.523e-2638.83Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=... [more]
PER1_ORYSJ4.303e-2640.21Peroxidase 1 OS=Oryza sativa subsp. japonica GN=PR... [more]
PERX_LUPPO7.340e-2639.52Peroxidase (Fragment) OS=Lupinus polyphyllus PE=2 ... [more]
PER26_ARATH7.340e-2636.17Probable peroxidase 26 OS=Arabidopsis thaliana GN=... [more]
PER63_ARATH1.252e-2538.62Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=... [more]
PER7_ARATH3.084e-2437.11Peroxidase 7 OS=Arabidopsis thaliana GN=PER7 PE=2 ... [more]
PER31_ARATH1.999e-2337.30Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=... [more]
PER24_ARATH1.999e-2339.38Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=... [more]
PER1_MAIZE1.999e-2336.79Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832245 ID=CF832245; Name=CF832245; organism=Citrus sinensis; type=EST; length=836bp
TTTTTTTTTTTTTTTTTGAACCACAAACAAAAGTTTAATTAATCTACTTG
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCGAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGCAAGAGCTCTGTTTGC
CGTTCTGCTGTCTCTTCTTCCCAATGGAACTGCCCA
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