CF832245

Overview
NameCF832245
Unique NameCF832245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832245_ssr237 microsatellite CF832245_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:459..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER13_ARATH (Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.210e-22
Identity = 75/193 (38.86%), Postives = 104/193 (53.89%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALS-GAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDF-GRNQNA---FFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            + VP GRRD   AN   A +NLP   D+++ LKS FR  GL+D+ DLV LS GAHT G   C F   RL         DPT++  F Q LR  CPQGG+  V    D  +  VFDN+ F N++  +G++ SD  L+     +   I++ +   NQ++   F  +F  +MI+MG +    G +GEIR  C   N
Sbjct:  137 YEVPTGRRDGLIANVDHA-KNLPDVQDSINTLKSKFREKGLSDQ-DLVLLSAGAHTIGTTACFFVIPRL------DAQDPTINPEFFQILRSKCPQGGDVNVRIPLDWDSQFVFDNQIFQNIKNGRGVILSDSVLYQ--DNNMKKIIDSYLETNQSSKANFAADFTKAMIKMGAIGVKIGAEGEIRRLCSATN 319          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER41_ARATH (Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.886e-22
Identity = 69/189 (36.51%), Postives = 94/189 (49.74%), Query Frame = -1
Query:  273 WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF-DVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 836
            + V LGR+D   +       NLP    ++ ++ S F+  G   K +LVALSG HT G + C+ F  R++      K DP L+A F   L+ LC        +A F D  TP  FDN YF NL+   GLL SD  LF  P   T   VE +  NQ AFF++F  +M ++G +       GE+R  C   N
Sbjct:  142 YEVKLGRKDGFESKAHKVKGNLPLANQSVPDMLSIFKKNGFTLK-ELVALSGGHTIGFSHCKEFSNRIFP-----KVDPELNAKFAGVLKDLCKNFETNKTMAAFLDPVTPGKFDNMYFKNLKRGLGLLASDHILFKDP--STRPFVELYANNQTAFFEDFARAMEKLGRVGVKGEKDGEVRRRCDHFN 322          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.924e-22
Identity = 70/189 (37.04%), Postives = 94/189 (49.74%), Query Frame = -1
Query:  273 VPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQ---GGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 830
            +  GRRDSR +        +P   D+L  + S+F ++G+ D    VAL GAH+ GR  C     RLY        DPTLD ++   L+K CP      N  + +  D  TP V DN Y+ N+   KGLL  D EL + P   TA  V     + N F + F   +  +    PLTG+QGEIR +CR VN
Sbjct:  147 IKTGRRDSRGSYLGDVETLIPNHNDSLSSVISTFNSIGI-DVEATVALLGAHSVGRVHCVNLVHRLYP-----TIDPTLDPSYALYLKKRCPSPTPDPNAVLYSRNDRETPMVVDNMYYKNIMAHKGLLVIDDELATDPR--TAPFVAKMAADNNYFHEQFSRGVRLLSETNPLTGDQGEIRKDCRYVN 327          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PERN_IPOBA (Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.433e-21
Identity = 71/186 (38.17%), Postives = 90/186 (48.39%), Query Frame = -1
Query:  273 VPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 830
            + LGR+D+RTAN   AN  LP PFD L    + F + G N + ++V L+GAHT G ++C          N       TL  T        CP   N   L   D  +P  FD KYF  L   +GLL SDQEL  +    TA  V  +     AF  +F  +M++M NL P  G Q EIR  C RVN
Sbjct:  178 ITLGRQDARTANLTGANTQLPAPFDNLSIQTAKFADKGFNQR-EMVVLAGAHTVGFSRCAVL---CTSTNLNQNRSATLQCT--------CPASANDTGLVGLD-PSPGTFDKKYFEELVKGQGLLFSDQELMQSNATVTA--VRRYRDATGAFLTDFAAAMVKMSNLPPSAGVQLEIRNVCSRVN 348          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER46_ARATH (Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.433e-21
Identity = 62/188 (32.98%), Postives = 95/188 (50.53%), Query Frame = -1
Query:  273 VPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLY--DFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 830
            +P GRRD + +  A    N+     TLD++  +F + GL+ + DLV LSGAHT G + C  F GR       N    D +LD ++ + L   C    +  +  + D  T  VFDN+Y+ NL   KGL Q+D  L       T  +VE+   ++ +FF+ +  S +++  +    G  GEIR +C  VN
Sbjct:  142 IPTGRRDGKESMAANVRPNIIDTDFTLDQMIDAFSSKGLSIQ-DLVVLSGAHTIGASHCNAFNGRFQRDSKGNFEVIDASLDNSYAETLMNKCSSSESSSLTVSNDPETSAVFDNQYYRNLETHKGLFQTDSALME--DNRTRTMVEELASDEESFFQRWSESFVKLSMVGVRVGEDGEIRRSCSSVN 326          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER1_SOLLC (Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.444e-21
Identity = 75/193 (38.86%), Postives = 99/193 (51.30%), Query Frame = -1
Query:  264 WAVPLGRRDSRTANRALANQNLPGPFD--TLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 836
            ++V LGR D+RTAN + A   LP PFD  T+   K S +N  L +   +VAL+GAHT G A+C            +G  +P        QL+  C        L   D TTP +FD  Y+ NL   +G++ SDQ L  T  A TA  V D+  + N F  +F  +MI+MG+L P  G Q EIR  C RVN  S
Sbjct:  187 YSVALGRSDARTANFSGAINQLPAPFDNLTVQIQKFSDKNFTLRE---MVALAGAHTVGFARCS-------TVCTSGNVNPAA------QLQCNCSATLTDSDLQQLD-TTPTMFDKVYYDNLNSNQGIMFSDQVL--TGDATTAGFVTDYSNDVNVFLGDFAAAMIKMGDLPPSAGAQLEIRDVCSRVNPTS 360          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER48_ARATH (Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 2.069e-20
Identity = 67/216 (31.02%), Postives = 97/216 (44.91%), Query Frame = -1
Query:  279 GRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCP-QGGNGGVLANFDVTTP----------------------------------DVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRR 821
            GR+DS  A R  A   LP P  TL  +   F   G N++ + V+L GAH+ G   C FF+ RLY+F+ TGKPDP L+  FLQ+L+  CP         A  D+  P                                  + F  +YF  L   KGL+ SDQ+L  +    T   V  +  +   F + F  SM+++ +   LTG  G++R +C +
Sbjct:  187 GRKDSAAAYRDFAEHELPAPDATLSVILQRFSFRGFNER-ETVSLFGAHSIGITHCTFFKNRLYNFSATGKPDPELNPGFLQELKTKCPFSVSTSSPSAPPDIGLPPSLPASDSENSYGMSSGNRNDEVIDLSYNNEGGDENFGTRYFRRLMQNKGLMSSDQQLMGS--EVTEMWVRAYASDPLLFRREFAMSMMKLSSYNVLTGPLGQVRTSCSK 399          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PERX_SOLTU (Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.528e-20
Identity = 71/189 (37.57%), Postives = 93/189 (49.21%), Query Frame = -1
Query:  264 VPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 830
            V LGR D+RTAN   A   LP PFD L      F +     + ++VAL+GAHT G A+C            +G  +P        QL+  C        L   D TTP +FD  Y+ NL   +G++ SDQ L  T  A TA  V D+  + + F  +F  +MI+MG+L P  G Q EIR  C RVN  S
Sbjct:  188 VALGRSDARTANFTGALTQLPAPFDNLTVQIQKFNDKNFTLR-EMVALAGAHTVGFARCS-------TVCTSGNVNPAA------QLQCNCSATLTDSDLQQLD-TTPTMFDKVYYDNLNNNQGIMFSDQVL--TGDATTAGFVTDYSNDVSVFLGDFAAAMIKMGDLPPSAGAQLEIRDVCSRVNPTS 359          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER18_ARATH (Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.027e-19
Identity = 66/189 (34.92%), Postives = 92/189 (48.68%), Query Frame = -1
Query:  273 VPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGR--LYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGV-LANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 830
            +P GRRD R +  A    N+     T+D++ + F + GL+   DLV LSGAHT G A C  F  R  L    N    D +LD ++ Q L   C    +    + + D  T   FDN+Y+ NL   KGL Q+D  L       T  IVE    +Q +FF  +  S ++M  +    G +GEIR +C  VN
Sbjct:  144 IPTGRRDGRVSMAANVRPNIIDTDFTVDKMINIFSSKGLSVH-DLVVLSGAHTIGAAHCNTFNSRFKLDPKGNLELIDASLDNSYAQTLVNKCSSSLDPTTTVVDNDPETSSTFDNQYYKNLLAHKGLFQTDSALMEDDR--TRKIVEILANDQESFFDRWTESFLKMSLMGVRVGEEGEIRRSCSAVN 329          
BLAST of CF832245 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.751e-19
Identity = 62/187 (33.16%), Postives = 98/187 (52.41%), Query Frame = -1
Query:  273 VPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF-DVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 830
            V  GR+DS  ++       L  P  T+D + S F + GL  + ++VAL GAHT G + C+ F  R+++ ++   P   ++  +  +LRKLC    N   ++ F DV TP  FDN Y+ NL+   GLLQSD  +       T ++V+ +  ++ AFF  F  +M ++      TG  GE+R  C + N
Sbjct:  140 VKFGRKDSLVSDMNRVEGKLARPNMTMDHIISIFESSGLTVQ-EMVALVGAHTIGFSHCKEFASRIFNKSDQNGP-VEMNPKYAAELRKLCANYTNDEQMSAFNDVFTPGKFDNMYYKNLKHGYGLLQSDHAI--AFDNRTRSLVDLYAEDETAFFDAFAKAMEKVSEKNVKTGKLGEVRRRCDQYN 322          
The following BLAST results are available for this feature:
BLAST of CF832245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER13_ARATH2.210e-2238.86Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=... [more]
PER41_ARATH2.886e-2236.51Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=... [more]
PER21_ARATH4.924e-2237.04Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PERN_IPOBA1.433e-2138.17Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER46_ARATH1.433e-2132.98Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=... [more]
PER1_SOLLC2.444e-2138.86Suberization-associated anionic peroxidase 1 OS=So... [more]
PER48_ARATH2.069e-2031.02Putative Peroxidase 48 OS=Arabidopsis thaliana GN=... [more]
PERX_SOLTU3.528e-2037.57Suberization-associated anionic peroxidase OS=Sola... [more]
PER18_ARATH1.027e-1934.92Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=... [more]
PER6_ARATH1.751e-1933.16Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832245 ID=CF832245; Name=CF832245; organism=Citrus sinensis; type=EST; length=836bp
TTTTTTTTTTTTTTTTTGAACCACAAACAAAAGTTTAATTAATCTACTTG
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCGAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGCAAGAGCTCTGTTTGC
CGTTCTGCTGTCTCTTCTTCCCAATGGAACTGCCCA
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