CF832246

Overview
NameCF832246
Unique NameCF832246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7925 contig Csv1_Contig7925:111..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832246 vs. ExPASy Swiss-Prot
Match: PER18_ARATH (Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 85/211 (40.28%), Postives = 115/211 (54.50%), Query Frame = 1
Query:    1 QLSPFFYSSTCPNVLNTILDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGR--LYDFNNTGKPDPTLDATFLQQLRKLC 627
            +LS  FY+ +CP     + + ++ A SSD  +   L+RL FHDCFV GCD S+L+    T  S+    P N S  GF VI+++K  +E  CP  VSCADIL +AA  +V   GGP   +P GRRD R +  A    N+     T+D++ + F + GL+   DLV LSGAHT G A C  F  R  L    N    D +LD ++ Q L   C
Sbjct:   30 ELSFNFYAGSCPGAELIVRNTVRSASSSDPSVLGKLLRLIFHDCFVQGCDGSVLIRGNGTERSD----PGNASLGGFAVIESVKNILEIFCPGTVSCADILVLAARDAVEALGGPVVPIPTGRRDGRVSMAANVRPNIIDTDFTVDKMINIFSSKGLSVH-DLVVLSGAHTIGAAHCNTFNSRFKLDPKGNLELIDASLDNSYAQTLVNKC 235          
BLAST of CF832246 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 83/227 (36.56%), Postives = 123/227 (54.19%), Query Frame = 1
Query:    4 LSPFFYSSTCPNVLNTILDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNN-SARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF-DVTTP 678
            LS  +Y+ TCP    T++ ++     +        +RL FHDC VDGCDASIL+ ST    SE+ A  N +     F+VI  +K AVE  CP +VSC+DIL  A    +++ GGP   V  GR+DS  ++       L  P  T+D + S F + GL  + ++VAL GAHT G + C+ F  R+++ ++   P   ++  +  +LRKLC    N   ++ F DV TP
Sbjct:   22 LSSDYYTKTCPEFEETLVQIVTDKQIAAPTTAVGTLRLFFHDCMVDGCDASILVASTPRKTSERDADINRSLPGDAFDVITRIKTAVELKCPNIVSCSDILVGATRSLISMVGGPRVNVKFGRKDSLVSDMNRVEGKLARPNMTMDHIISIFESSGLTVQ-EMVALVGAHTIGFSHCKEFASRIFNKSDQNGP-VEMNPKYAAELRKLCANYTNDEQMSAFNDVFTP 246          
BLAST of CF832246 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30
Identity = 78/211 (36.97%), Postives = 113/211 (53.55%), Query Frame = 1
Query:    4 LSPFFYSSTCPNVLNTILDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDS-RTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQ 633
            LS  +Y  TCP V   +   L   F  D    A+L+RL FHDC V GCDASILL+        +  +  N   R  +++ ++K ++E  CP+ VSC+D++ +AA  +VAL+GGP  +VPLGR+DS  T ++ +A+  LP     +D   S F N G+  + + VA+ GAHT G   C     R   F+N       +D  F   LR  CP+
Sbjct:   38 LSYSYYEKTCPKVEEIVRSSLSSMFILDPTSPAALLRLMFHDCQVQGCDASILLEPIRDQQFTELDSAKNFGIRKRDLVGSIKTSLELECPKQVSCSDVIILAARDAVALTGGPLISVPLGRKDSLSTPSKHVADSELPPSTADVDTTLSLFANKGMTIE-ESVAIMGAHTIGVTHCNNVLSR---FDNANATSENMDPRFQTFLRVACPE 244          
BLAST of CF832246 vs. ExPASy Swiss-Prot
Match: PER41_ARATH (Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.525e-30
Identity = 81/228 (35.53%), Postives = 119/228 (52.19%), Query Frame = 1
Query:    4 LSPFFYSSTCPNVLNTILDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARG--FEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF-DVTTP 678
            L+  +Y  TCP+    + + +           A  +RL FHDCF++GCDAS+L+ +TN+ +  +     N S  G  F+++  +K A+E +CP VVSCADIL  A    V + GGP + V LGR+D   +       NLP    ++ ++ S F+  G   K +LVALSG HT G + C+ F  R++      K DP L+A F   L+ LC        +A F D  TP
Sbjct:   26 LTKDYYQKTCPDFNKIVRETVTPKQGQQPTTAAGTLRLFFHDCFMEGCDASVLI-ATNSFNKAERDDDLNESLPGDAFDIVTRIKTALELSCPGVVSCADILAQATRDLVTMVGGPFYEVKLGRKDGFESKAHKVKGNLPLANQSVPDMLSIFKKNGFTLK-ELVALSGGHTIGFSHCKEFSNRIFP-----KVDPELNAKFAGVLKDLCKNFETNKTMAAFLDPVTP 246          
BLAST of CF832246 vs. ExPASy Swiss-Prot
Match: PER65_ARATH (Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 77/224 (34.38%), Postives = 118/224 (52.68%), Query Frame = 1
Query:   16 FYSSTCPNVLNTILDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARG--FEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF-DVTTP 678
            +Y  TCP+    + + +           A  +RL FHDCF++GCDAS+L+ +TN+ +  +     N+S  G  F+++  +K A+E +CP VVSCADIL  A    V + GGP + V LGR+D   +       N+P    T+ ++   F+  G + + ++VALSGAHT G + C+ F  RLY      + D  ++  F   L+ LC        +A F DV TP
Sbjct:   37 YYQKTCPDFHKIVREAVTTKQVQQPTTAAGTLRLFFHDCFLEGCDASVLI-ATNSFNKAERDDDLNDSLPGDAFDIVTRIKTALELSCPGVVSCADILAQATRDLVTMVGGPYFDVKLGRKDGFESKAHKVRGNVPMANQTVPDIHGIFKKNGFSLR-EMVALSGAHTIGFSHCKEFSDRLYG----SRADKEINPRFAAALKDLCKNHTVDDTIAAFNDVMTP 254          
BLAST of CF832246 vs. ExPASy Swiss-Prot
Match: PER1_SORBI (Cationic peroxidase SPC4 (Fragment) OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 74/173 (42.77%), Postives = 101/173 (58.38%), Query Frame = 1
Query:    4 LSPFFYSSTCPNVLNTILDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPN-NNSARGFEVIDNMKAAVERAC-PRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRT-ANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHT 513
            LS  FY  +CP   + +   ++ A   D+ + A L+RLHFHDCFV GCDAS+LLD + T   E+ A PN       F+ I+++   + + C   VVSC+D+L +AA  SV +SGGPS+ VPLGRRDS + A +      LP P   +  L +    + L D  DLVALSG HT
Sbjct:   41 LSFDFYKRSCPKAESIVRSFVQDAVRRDVGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTLRPTAFKAINDIHDRLHKECGGTVVSCSDVLALAARDSVVVSGGPSYKVPLGRRDSASFATQQDVLSGLPPPTAAVPALLAVLSKINL-DATDLVALSGGHT 212          
BLAST of CF832246 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26
Identity = 70/205 (34.15%), Postives = 104/205 (50.73%), Query Frame = 1
Query:   16 FYSSTCPNVLNTILDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCP 630
            FY  TCP   + + + +K  +        S +R  FHDC V+ CDAS+LLDST     EK     +   R F  I+ +K A+ER CP VVSC+DIL ++A   +   GGP   +  GRRD   +   +    LP   +++  +   F+++G+ D   LVAL G+H+ GR  C     RLY      + DP+L+   +  +   CP
Sbjct:   35 FYKDTCPQAEDIVREQVKLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRRELGEK-EHDRSFGLRNFRYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGPYIPLKTGRRDGLKSRTDMLESYLPDHNESISVVLEKFKSIGI-DTPGLVALLGSHSVGRTHCVKLVHRLYP-----EVDPSLNPDHVPHMLHKCP 232          
BLAST of CF832246 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.356e-25
Identity = 70/211 (33.18%), Postives = 108/211 (51.18%), Query Frame = 1
Query:    1 QLSPFFYSSTCPNVLNTILDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGPS-WAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCP 630
            +L   +Y  +CP     I   ++  +        S +R  FHDC V  CDAS+LL++   ++SE+  +  +   R F+ +  +K A+E+ CP  VSCADI+ ++A   + +  GP    +  GRRDSR +        +P   D+L  + S+F ++G+ D    VAL GAH+ GR  C     RLY        DPTLD ++   L+K CP
Sbjct:   29 ELEMNYYKESCPKAEEIIRQQVETLYYKHGNTAVSWLRNLFHDCVVKSCDASLLLETARGVESEQ-KSKRSFGMRNFKYVKIIKDALEKECPSTVSCADIVALSARDGIVMLKGPKIEMIKTGRRDSRGSYLGDVETLIPNHNDSLSSVISTFNSIGI-DVEATVALLGAHSVGRVHCVNLVHRLYP-----TIDPTLDPSYALYLKKRCP 232          
BLAST of CF832246 vs. ExPASy Swiss-Prot
Match: PERX_WHEAT (Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  223 RGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSF 456
            RGF VID++K  +E  C + VSCADILT+AA  SV   GGPSW VPLGRRDS  AN A AN +LPG   +  EL+++F
Sbjct:    3 RGFGVIDSIKTQIEAICNQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSIDANEAEANSDLPGFNSSRSELEAAF 80          
The following BLAST results are available for this feature:
BLAST of CF832246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER18_ARATH1.662e-3240.28Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=... [more]
PER6_ARATH2.399e-3136.56Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]
PER29_ARATH2.031e-3036.97Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]
PER41_ARATH4.525e-3035.53Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=... [more]
PER65_ARATH8.533e-2934.38Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=... [more]
PER1_SORBI1.114e-2842.77Cationic peroxidase SPC4 (Fragment) OS=Sorghum bic... [more]
PER42_ARATH1.779e-2634.15Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER21_ARATH3.356e-2533.18Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PERX_WHEAT8.851e-1857.69Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832246 ID=CF832246; Name=CF832246; organism=Citrus sinensis; type=EST; length=683bp
CAACTTTCTCCCTTTTTTTATTCTTCCACATGCCCTAATGTATTGAACAC
TATCCTTGATGTGCTTAAGAAAGCTTTCTCGTCCGATATCCGGATCGGTG
CCAGCCTCATCAGGCTTCATTTCCATGACTGTTTTGTTGATGGGTGTGAT
GCATCGATTTTGCTGGACAGCACTAACACCATAGACAGCGAGAAATTTGC
TGCGCCAAATAACAATTCGGCGAGGGGTTTTGAAGTTATTGATAACATGA
AAGCTGCCGTTGAAAGGGCATGTCCAAGGGTTGTTTCCTGCGCTGATATT
CTTACTATTGCGGCTGAACGATCCGTTGCTTTGTCAGGGGGTCCGTCATG
GGCAGTTCCATTGGGAAGAAGAGACAGCAGAACGGCAAACAGAGCTCTTG
CAAATCAGAATCTTCCAGGACCATTTGATACTCTTGATGAGCTCAAATCT
AGTTTTAGAAATGTTGGCCTCAATGACAAGCTTGATCTTGTTGCACTCTC
CGGAGCACACACGTTCGGAAGGGCTCAGTGCCAATTTTTCAGGGGCAGAT
TATACGATTTTAACAACACTGGCAAGCCAGACCCAACCCTAGACGCAACC
TTCTTACAACAACTGAGGAAACTATGCCCACAAGGTGGAAACGGCGGCGT
TCTTGCTAATTTTGATGTCACGACACCTGATGT
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