CF832247

Overview
NameCF832247
Unique NameCF832247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1145 contig Csv1_Contig1145:14..489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER2_CUCSA (Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.701e-24
Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = -1
Query:  210 NLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 464
            NLD +TP+ FD +Y++NLQ+N G L SDQ L STPG DT+ IVN F++++  FFESF  SMI MGN+  LTG QGEIRSNCRR+N
Sbjct:  208 NLDPTTPNKFDKNYYTNLQSNTGPLTSDQVLHSTPGEDTVKIVNLFAASQNQFFESFGQSMINMGNIQPLTGNQGEIRSNCRRLN 292          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.466e-24
Identity = 55/94 (58.51%), Postives = 69/94 (73.40%), Query Frame = -1
Query:  198 SVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANNL 476
            SVL + DL TP  FDN Y+ NL+   GL+QSDQELFS+P A DTIP+V +F+     FF +F  +M RMGN++ LTGTQGEIR NCR VN+N+L
Sbjct:  244 SVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSFADGTQKFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNSL 337          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.103e-23
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = -1
Query:  198 SVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANNL 476
            SVL + DL TP  FDN Y+ NL+   GL+QSDQELFS+P A DTIP+V +++     FF +F  +M RMGN++ LTGTQGEIR NCR VN+N+L
Sbjct:  225 SVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSYADGTQTFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNSL 318          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.881e-23
Identity = 53/94 (56.38%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  198 SVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANNL 476
            S L + DL TP  FDN Y+ NL+   GL+QSDQELFS+P A DTIP+V +F+++   FF +F  +M RMGN++ LTGTQG+IR NCR VN+N+L
Sbjct:  246 SALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNSL 339          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER37_ARATH (Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.148e-23
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = -1
Query:  201 SVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANN 476
            SVL + DL TP  FDN Y+ NL+ N GL+QSDQELFS+P A DT+P+V  ++  +  FF++FA +MIRM +LS LTG QGEIR NCR VN+ +
Sbjct:  238 SVLVDFDLRTPTLFDNKYYVNLKENKGLIQSDQELFSSPDASDTLPLVREYADGQGKFFDAFAKAMIRMSSLSPLTGKQGEIRLNCRVVNSKS 330          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER2_ARMRU (Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.148e-23
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = -1
Query:  207 SVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNA 476
            SVL + DL TP  FDN Y+ NL+ N GL+QSDQELFS+P A DTIP+V  ++  +  FF++F  +MIRMGNLS  TG QGEIR NCR VN+
Sbjct:  240 SVLVDFDLRTPTIFDNKYYVNLKENKGLIQSDQELFSSPDASDTIPLVRAYADGQGKFFDAFVEAMIRMGNLSPSTGKQGEIRLNCRVVNS 330          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER32_ARATH (Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 2.716e-22
Identity = 51/94 (54.26%), Postives = 68/94 (72.34%), Query Frame = -1
Query:  198 SVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANNL 476
            +VL + DL TP  FDN Y+ NL+   GL+Q+DQELFS+P A DTIP+V  ++     FF +F  +M RMGN++ LTGTQG+IR NCR VN+N+L
Sbjct:  245 TVLVDFDLRTPTVFDNKYYVNLKELKGLIQTDQELFSSPNATDTIPLVREYADGTQKFFNAFVEAMNRMGNITPLTGTQGQIRQNCRVVNSNSL 338          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER33_ARATH (Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.633e-22
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = -1
Query:  198 SVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANNL 476
            SVL + DL TP  FDN Y+ NL+   GL+QSDQELFS+P A DTIP+V  ++     FF +F  +M RMGN++  TGTQG+IR NCR VN+N+L
Sbjct:  247 SVLVDFDLRTPLVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRAYADGTQTFFNAFVEAMNRMGNITPTTGTQGQIRLNCRVVNSNSL 340          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER38_ARATH (Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.052e-22
Identity = 51/93 (54.84%), Postives = 68/93 (73.12%), Query Frame = -1
Query:  201 SVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTP-GADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANN 476
            SVL + DL TP  FDN Y+ NL+ N GL+QSDQELFS+P  ADT+P+V  ++  +  FF++F  ++IRM +LS LTG QGEIR NCR VN+ +
Sbjct:  238 SVLVDFDLRTPTLFDNKYYVNLKENKGLIQSDQELFSSPDAADTLPLVRAYADGQGTFFDAFVKAIIRMSSLSPLTGKQGEIRLNCRVVNSKS 330          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER34_ARATH (Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.052e-22
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = -1
Query:  198 SVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANNL 476
            S L + DL TP  FDN Y+ NL+   GL+QSDQELFS+P A DTIP+V  ++     FF +F  +M RMGN++  TGTQG+IR NCR VN+N+L
Sbjct:  246 SALVDFDLRTPTVFDNKYYVNLKERKGLIQSDQELFSSPNATDTIPLVRAYADGTQTFFNAFVEAMNRMGNITPTTGTQGQIRLNCRVVNSNSL 339          
The following BLAST results are available for this feature:
BLAST of CF832247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PER2_CUCSA1.701e-2462.35Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV... [more]
PER1B_ARMRU6.466e-2458.51Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]
PER1C_ARMRU1.103e-2357.45Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER1A_ARMRU1.881e-2356.38Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER37_ARATH7.148e-2356.99Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=... [more]
PER2_ARMRU7.148e-2359.34Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3... [more]
PER32_ARATH2.716e-2254.26Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=... [more]
PER33_ARATH4.633e-2255.32Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=... [more]
PER38_ARATH6.052e-2254.84Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=... [more]
PER34_ARATH6.052e-2254.26Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832247 ID=CF832247; Name=CF832247; organism=Citrus sinensis; type=EST; length=476bp
TTTTTTTTTTTTTTTTTCCAACGGGCTCATAATTTTATTCAGACCCTGAA
AATATTGTTAGGACAAACACGAGACAAGGTACATGAGTTTGTTACCCACA
AACTCTCAACAGCAAAACTACTTCACACAGTTTTATTTTATGCTTTCATG
ATTTAGATAGAGCTGACCAAACCGCCATCTGATGATGATCTGGTTGATAA
ATTGTTTGCATTAACCCTTCTGCAGTTTGACCTGATCTCTCCTTGAGTCC
CTGTTAGAAGGCTTAAATTCCCCATTCTGATCATAGAAACCGCAAAGCTT
TCAAAGAAAGCAGTTTCGTTGCTGCTAAAGTTGTTGACAATGGGAATGGT
ATCGGCGCCGGGTGTCGAAAACAGCTCTTGATCACTCTGTAAAAGGCCAT
TGTTAGCTTGAAGATTGGAGAAATAATCGTTGTCAAAACCATCCGGTGTT
GAGAGATCAAGATTCGTTAGGACGCT
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