CF832248

Overview
NameCF832248
Unique NameCF832248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1145 contig Csv1_Contig1145:14..490. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832248 vs. ExPASy Swiss-Prot
Match: PER2_ORYSI (Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX112 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 9.661e-20
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 2
Query:    2 SVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 268
            S L  LD +TP+ FD+ Y++NL +N GLL SDQ LF+  G  T   V NFSSN  AF  +F V+M++MGN+S LTGTQG+IR NC +VN
Sbjct:  228 SNLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLFN--GGSTDNTVRNFSSNTAAFNSAFTVAMVKMGNISPLTGTQGQIRLNCSKVN 314          
BLAST of CF832248 vs. ExPASy Swiss-Prot
Match: PER2_ORYSJ (Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 48/89 (53.93%), Postives = 62/89 (69.66%), Query Frame = 2
Query:    2 SVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 268
            S L  LD +TP+ FD+ Y++NL +N GLL SDQ LF+  G  T   V NFSSN  AF  +F  +M++MGN+S LTGTQG+IR NC +VN
Sbjct:  228 SNLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLFN--GGSTDNTVRNFSSNTAAFNSAFTAAMVKMGNISPLTGTQGQIRLNCSKVN 314          
BLAST of CF832248 vs. ExPASy Swiss-Prot
Match: PER36_ARATH (Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.395e-18
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 2
Query:    8 LTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 268
            L NLD  TP  FDN Y+ NL    GLL SD+ LF T   +T+ +V  ++ NE AFFE FA SM++MGN+S LTGT GEIR  CRRVN
Sbjct:  256 LFNLDYVTPTKFDNYYYKNLVNFRGLLSSDEILF-TQSIETMEMVKYYAENEGAFFEQFAKSMVKMGNISPLTGTDGEIRRICRRVN 341          
BLAST of CF832248 vs. ExPASy Swiss-Prot
Match: PER1_WHEAT (Peroxidase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-18
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    8 LTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNA 271
            L NLD  TP+ FDN Y++NL +  GLL SDQ LF+    D    V NF+SN  AF  +F  +MI+MGN++ LTGTQG+IR +C +VN+
Sbjct:  227 LANLDTMTPNAFDNAYYTNLLSQKGLLHSDQVLFNNETTDNT--VRNFASNAAAFSSAFTTAMIKMGNIAPLTGTQGQIRLSCSKVNS 312          
BLAST of CF832248 vs. ExPASy Swiss-Prot
Match: PER66_MAIZE (Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.301e-18
Identity = 44/90 (48.89%), Postives = 65/90 (72.22%), Query Frame = 2
Query:    2 SVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNA 271
            + L  LD +TP+ FDN Y++NL +  GLL SDQELF++   D+   V +F+S+ +AF  +FA +M++MGNLS  TGTQG+IR +C +VN+
Sbjct:  233 TALAPLDTTTPNAFDNAYYTNLLSQKGLLHSDQELFNSGSTDST--VRSFASSTSAFNSAFATAMVKMGNLSPQTGTQGQIRRSCWKVNS 320          
BLAST of CF832248 vs. ExPASy Swiss-Prot
Match: PER1_HORVU (Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.043e-18
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 2
Query:    8 LTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNA 271
            L NLD +T + FDN Y++NL +  GLL SDQ LF+    D    V NF+SN  AF  SF  +MI+MGN++  TGTQG+IR +C RVN+
Sbjct:  230 LANLDTTTANTFDNAYYTNLMSQKGLLHSDQVLFNNDTTDNT--VRNFASNPAAFSSSFTTAMIKMGNIAPKTGTQGQIRLSCSRVNS 315          
BLAST of CF832248 vs. ExPASy Swiss-Prot
Match: PER49_ARATH (Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.181e-17
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 2
Query:    5 VLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNA 271
            +L+ LD+ +   FDN YF NL  N GLL SDQ LFS+    +  +V  ++ ++  FFE FA SMI+MGN+S LTG+ GEIR NCR++N+
Sbjct:  244 ILSVLDIISAASFDNSYFKNLIENKGLLNSDQVLFSS-NEKSRELVKKYAEDQGEFFEQFAESMIKMGNISPLTGSSGEIRKNCRKINS 331          
BLAST of CF832248 vs. ExPASy Swiss-Prot
Match: PER70_MAIZE (Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.015e-17
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = 2
Query:    8 LTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 268
            L  LD +TP  FDN Y++NL A  GLL SDQ+LF+  G  T  +V  ++S    F   FA +MIRMGN+S LTGTQG+IR  C RVN
Sbjct:  237 LAPLDTATPTAFDNAYYTNLLAQRGLLHSDQQLFN--GGATDGLVRTYASTPRRFSRDFAAAMIRMGNISPLTGTQGQIRRACSRVN 321          
BLAST of CF832248 vs. ExPASy Swiss-Prot
Match: PER15_ARATH (Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.015e-17
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 2
Query:    8 LTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 268
            L+ LD+++   FDN YF NL  N GLL SD+ LFS+    +  +V  ++ ++  FFE FA SMI+MGN+S LTG+ GEIR NCR++N
Sbjct:  251 LSELDINSAGRFDNSYFKNLIENMGLLNSDEVLFSS-NEQSRELVKKYAEDQEEFFEQFAESMIKMGNISPLTGSSGEIRKNCRKIN 336          
BLAST of CF832248 vs. ExPASy Swiss-Prot
Match: PER72_ARATH (Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.998e-17
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 2
Query:   17 LDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 268
            LD +TP  FDN YF NL    GLL SD+ LF T    +  +V  ++ N+ AFFE FA SM++MGN+S LTG +GEIR  CRRVN
Sbjct:  251 LDFATPFKFDNHYFKNLIMYKGLLSSDEILF-TKNKQSKELVELYAENQEAFFEQFAKSMVKMGNISPLTGAKGEIRRICRRVN 333          
The following BLAST results are available for this feature:
BLAST of CF832248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PER2_ORYSI9.661e-2055.06Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX1... [more]
PER2_ORYSJ2.811e-1953.93Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PR... [more]
PER36_ARATH1.395e-1856.32Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=... [more]
PER1_WHEAT1.822e-1851.14Peroxidase OS=Triticum aestivum PE=2 SV=1[more]
PER66_MAIZE5.301e-1848.89Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1[more]
PER1_HORVU9.043e-1851.14Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1[more]
PER49_ARATH1.181e-1749.44Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=... [more]
PER70_MAIZE2.015e-1752.87Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1[more]
PER15_ARATH2.015e-1749.43Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=... [more]
PER72_ARATH9.998e-1753.57Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832248 ID=CF832248; Name=CF832248; organism=Citrus sinensis; type=EST; length=477bp
CAGCGTCCTAACCAATCTTGATCTCTCAACACCGGATGGTTTTGACAACG
ATTATTTCTCCAATCTTCAAGCTAACAATGGCCTTTTACAGAGTGATCAA
GAGCTGTTTTCGACACCCGGCGCCGATACCATTCCCATTGTCAACAACTT
TAGCAGCAACGAAACTGCTTTCTTTGAAAGCTTTGCGGTTTCTATGATCA
GAATGGGGAATTTAAGCCTTCTAACAGGGACTCAAGGAGAGATCAGGTCA
AACTGCAGAAGGGTTAATGCAAACAATTTATCAACCAGATCATCATCAGA
TGGCGGTTTGGTCAGCTCTATCTAAATCATGAAAGCATAAAATAAAACTG
TGTGAAGTAGTTTTGCTGTTGAGAGTTTGTGGGTAACAAACTCATGTACC
TTGTCTCGTGTTTGTCCTAACAATATTTTCAGAATCTGAATAAAATTATG
AGCCCGTTTGGAAAAAAAAAAAAAAAA
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