CF832249

Overview
NameCF832249
Unique NameCF832249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1009 contig Csv1_Contig1009:391..1237. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.445e-15
Identity = 46/131 (35.11%), Postives = 78/131 (59.54%), Query Frame = -3
Query:  455 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQN 844
            +G+LYE+S++S ++  ++RY++ + D          + + +  E   L+ ++  +Q S R +LGE L  L  KEL+ +E +LE  +  IRSKKN+LLF  I  +QK+E  L N N +L+ K+ E E+ + N
Sbjct:   51 KGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQ-KLMETEKEKNN 180          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.499e-15
Identity = 44/132 (33.33%), Postives = 81/132 (61.36%), Query Frame = -3
Query:  446 GRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNL 841
            G+LY+++++S+KS IDRY K+  +     +   +  +F+Q+EAA LR ++  +Q ++R M+GE L+GL+  EL ++E ++E  +  IR +K +LL  EI+ + ++   +H  N  L  K+      Q+N+ L
Sbjct:   52 GKLYDFASSSMKSVIDRYNKSKIEQQQLLNPA-SEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIH--QENVEL 180          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.876e-15
Identity = 53/173 (30.64%), Postives = 95/173 (54.91%), Query Frame = -3
Query:  332 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAEN-ERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQM 844
            RG+LYE+ + S +  T++RY++ +  +  T    +     YQ E  KL+ ++  +Q S+RN+LGE L  L+ KEL+ +E +L+K + +IRS K + +  ++  +QK+E  L  SN+ L+ K+ E+    + N ++ Q G  +   +  P    +  Q+   + T     QDQM
Sbjct:   51 RGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQ-EYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEESCASFRPNWDVRQPGDGF--FEPLPLPCNNNLQIGYNEAT-----QDQM 215          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.876e-15
Identity = 46/149 (30.87%), Postives = 84/149 (56.38%), Query Frame = -3
Query:  407 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERG--QQNMNLMQGGSSYEIIQSQ 844
            +G+L+EYS +S ++  ++RY +             + ++ +  E AKL+ ++  ++ + RN +GE L  L+ KEL+++E +L   I  IRS+KN+ +F  I  +QK++  L + N  L  KI E E+    Q + L+Q  ++  I+Q Q
Sbjct:   51 KGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKEREKNTVHQEVQLIQCSNNSSILQPQ 199          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 1.002e-14
Identity = 51/185 (27.57%), Postives = 99/185 (53.51%), Query Frame = -3
Query:  323 RGRLYEYSNNS-VKSTIDRYKKAT-ADTSNTGSICEANAQF-YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE---RGQQNMNLMQGGSSYEIIQSQPFDSRSYFQV-----NALQPTNHYPRQDQMALQ 844
            +G+L+EYS+ S ++  ++RY++ + A+          NAQ  +  E ++L+ +I  ++ + R+ LGE L  ++ K+L+N+E +LE  +  IRS+KN+L+   + ++Q++E ++   N +L  +I E E   R +Q        S  ++ Q QPF     + +       L     Y  +DQ A++
Sbjct:   51 KGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENILRTKQTQCEQLNRSVDDVPQPQPFQHPHLYMIAHQTSPFLNMGGLYQEEDQTAMR 235          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14
Identity = 46/121 (38.02%), Postives = 74/121 (61.16%), Query Frame = -3
Query:  485 RGRLYEYSNN-SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAK 844
            RGRLYE+++  S++ TIDRYK  T D  N  +I + + Q  + +   L  ++  +  S R +LGE+L G + +EL+ +E +LEK + +IR KK ELL  +I  ++++E  L   N+ LR K
Sbjct:   51 RGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTI-QQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGK 170          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14
Identity = 47/145 (32.41%), Postives = 87/145 (60.00%), Query Frame = -3
Query:  407 GRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQ 841
            GRLY++S++S+KS I+RY++A  +     +   + A+F+Q+E   LR Q+ N+ ++NR +LGE +S    ++L+ ++ ++E  +  IR+KK++LL  EI  + ++   +   N  LR K   N   Q+N+ L +  +S E   S+
Sbjct:   52 GRLYDFSSSSMKSIIERYQEAGEEHCRLLNPM-SEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKKF--NIAHQRNIELHKKLNSGESTSSE 193          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14
Identity = 50/178 (28.09%), Postives = 91/178 (51.12%), Query Frame = -3
Query:  347 RGRLYEYSNNSVKSTI----DRYKKA-----TADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPT---NHYP 844
            +G+LYEY+ +S    I    +RY  A     +A++   G+ C         E  KL+ ++  +Q   ++++GE L  LN KEL+ +E +LE  +  IRS+K++L+   I  +Q++E  L   N++L+ ++ E ++ Q+          ++  Q Q   S S F +    PT   ++YP
Sbjct:   51 KGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCH--------EYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQ------VQWDQTQPQTSSSSSSFMMREALPTTNISNYP 214          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.809e-14
Identity = 46/121 (38.02%), Postives = 73/121 (60.33%), Query Frame = -3
Query:  485 RGRLYEYSNN-SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAK 844
            RGRLYE+++  S++ TIDRYK  T D  N  +I + + Q  + +   L  ++  +  S R +LGE+L G + +EL+ +E +LEK +  IR KK ELL  +I  ++++E  L   N+ LR K
Sbjct:   51 RGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTI-QQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGK 170          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.809e-14
Identity = 42/130 (32.31%), Postives = 77/130 (59.23%), Query Frame = -3
Query:  458 RGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQ 844
            RG+LYE+ S+ S+  T+++Y+K    +  + +I     Q  QQE  KL+ ++  +Q S RN+LGE L  L  KEL+ +E +L+  + +IRS + + +  ++  +Q+RE  L  +N+ L+ +  E+ +  Q
Sbjct:   51 RGKLYEFCSSTSMLKTLEKYQKCNFGSPES-TIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQ 179          
The following BLAST results are available for this feature:
BLAST of CF832249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
MAD18_ORYSI3.445e-1535.11MADS-box transcription factor 18 OS=Oryza sativa s... [more]
AGL21_ARATH4.499e-1533.33Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
CMB1_DIACA5.876e-1530.64MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
AGL8_SINAL5.876e-1530.87Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
CAL_ARATH1.002e-1427.57Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
MAD56_ORYSJ1.710e-1438.02MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD25_ORYSJ1.710e-1432.41MADS-box transcription factor 25 OS=Oryza sativa s... [more]
MAD14_ORYSJ1.710e-1428.09MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD56_ORYSI3.809e-1438.02MADS-box transcription factor 56 OS=Oryza sativa s... [more]
AGL9_ARADE3.809e-1432.31Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832249 ID=CF832249; Name=CF832249; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTTACTAATCATTAATATCATATTCGAAATTAACATCA
AATGCAGAGACTTTGTGTTTGCATTAGGCATACAGAATATGAATTCATGG
CTGACAAACATATATATAATATTTATGAGTCTTAAAATAGTTTATATAGC
TACTAGCTTAGGCCCCTGATGATCACTTAATTAAGCAAAGTTGATTTCTT
CGCTGCATCTTATAGCAATTTTGAGCGCGCACCTGCACACCTTTTATCTA
GAATGAAGTAATAGCTAGATACCCTCCATAGGATATGACATGGCAGAATA
TTCTTCAAACATATTAAACTAACTGAAGGGCCATCTGATCCTGGCGTGGG
TAATGATTGGTGGGCTGTAATGCATTGACTTGGAAATAGCTCCGGGAATC
AAATGGCTGAGACTGTATAATCTCGTAGCTACTCCCTCCTTGCATCAAAT
TCATGTTCTGCTGTCCTCTTTCATTCTCGGCTATCTTTGCTCGGAGAAGC
TGGTTGCTGTTGTGCAAGTCAACTTCCCTCTTCTGCATGTACTCAATTTC
TGCAAACAGCAGCTCATTCTTTTTAGATCGGATTCTGCTAATACCTTTCT
CTAAACGAGTCTCCATGTTCTTGAGTTCCTTGAAATTTAACCCACTTAGT
GATTCACCCAACATGTTTCTGTTTGAATTTTGCATATTGCTAATTTGTAT
CCTCAGCTTGGCAGCTTCTTGCTGGTAGAACTGAGCATTTGCTTCACAGA
TAGACCCAGTATTTGAGGTATCTGCAGTGGCCTTCTTGTACCTGTCAATT
GTTGATTTCACACTGTTGTTGGAATACTCATAAAGGCGGCCGCGGC
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