CF832249

Overview
NameCF832249
Unique NameCF832249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1009 contig Csv1_Contig1009:391..1237. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 41/138 (29.71%), Postives = 78/138 (56.52%), Query Frame = -3
Query:  431 RGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGS 844
            RG+LYE+ +  +  T++RY+    +  ++ +       +Y  E +KL+ +   +Q + R++LGE L  L+ KEL+ +E +LE  +S+ R +K +L+  ++E ++++E  L   N+ L+ K+ E E    N   MQ  S
Sbjct:   51 RGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSETQSWYH-EMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKL-EVEGSTSNYRAMQQAS 186          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 49/178 (27.53%), Postives = 91/178 (51.12%), Query Frame = -3
Query:  347 RGRLYEYSNNSVKSTI----DRYKKA-----TADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPT---NHYP 844
            +G+LY+Y+ +S    I    +RY  A     +A++   G+ C         E  KL+ ++  +Q   ++++GE L  LN KEL+ +E +LE  +  IRS+K++L+   I  +Q++E  L   N++L+ ++ E ++ Q+          ++  Q Q   S S F +    PT   ++YP
Sbjct:   51 KGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCH--------EYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQ------VQWDQTQPQTSSSSSSFMMREALPTTNISNYP 214          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 42/133 (31.58%), Postives = 77/133 (57.89%), Query Frame = -3
Query:  455 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER--GQQN 844
            +G+L+EY+N+S ++  ++RY++ +            +   +  E AKL+ ++  +Q + ++ +GE L  LN KEL+N+E +L+  +  IRS+KN+L+   I  +QK++  L   N  L  K+ E E+   QQN
Sbjct:   51 KGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVAQQN 183          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 40/120 (33.33%), Postives = 74/120 (61.67%), Query Frame = -3
Query:  485 RGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAK 844
            RG+LYE+ +  ++STI+RY +   + S + +  E   Q + QE  KL+ +  ++  +NRN+LGE L  +  KEL+ +E +LE  ++  R +K +++  E+E ++K+E  L + N+ L+ K
Sbjct:   51 RGKLYEFGSVGIESTIERYNRCY-NCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIK 169          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 48/172 (27.91%), Postives = 96/172 (55.81%), Query Frame = -3
Query:  350 RLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQ--------GGSSYEIIQSQPFDSRSYFQVNALQP-TNHY 838
            +LY+++++SVKSTI+R+  A  +     +   +  +F+Q+EA  LR ++ ++Q + R + G  L+GL+ KEL+N+E++LE  +  IR K+ ++L  EI+ + ++   +H+ N  L  K+      Q+N+ L +         G  +  +    ++S +  ++   QP  +HY
Sbjct:   53 KLYDFASSSVKSTIERFNTAKMEEQELMNPA-SEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKVQRIH--QENVELYKKAYGTSNTNGLGHHELVDAVYESHAQVRLQLSQPEQSHY 221          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 46/152 (30.26%), Postives = 87/152 (57.24%), Query Frame = -3
Query:  404 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE-NERGQQNMNLMQGG---SSYEIIQSQP 844
            RGRL+E+S++S +  T++RY+    ++ +  +      +   QE  KL+ ++  +Q + RN+LGE L  L+ KEL+ +E ++E  + +IRS+KN+ L  ++  ++ +E  L + N+ LR K+ E +     +M+   GG    S  ++  QP
Sbjct:   51 RGRLFEFSSSSCMYKTLERYRSCNYNSQDAAA---PENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQP 199          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 46/152 (30.26%), Postives = 87/152 (57.24%), Query Frame = -3
Query:  404 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE-NERGQQNMNLMQGG---SSYEIIQSQP 844
            RGRL+E+S++S +  T++RY+    ++ +  +      +   QE  KL+ ++  +Q + RN+LGE L  L+ KEL+ +E ++E  + +IRS+KN+ L  ++  ++ +E  L + N+ LR K+ E +     +M+   GG    S  ++  QP
Sbjct:   51 RGRLFEFSSSSCMYKTLERYRSCNYNSQDAAA---PENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQP 199          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 41/120 (34.17%), Postives = 75/120 (62.50%), Query Frame = -3
Query:  485 RGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAK 844
            R +LYE+S++S+ +TI+RY++   +  N     + N+Q  + E + L  +I  ++ S R +LGE +   + +EL+ +E +L++ +SRIR+KK +LL  EIE ++  E +L   N+ L+ K
Sbjct:   51 RSKLYEFSSSSIAATIERYQRRIKEIGNNHKRND-NSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEK 169          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.108e-13
Identity = 43/129 (33.33%), Postives = 76/129 (58.91%), Query Frame = -3
Query:  467 RGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEAN--AQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 844
            RG+LYE+ S  S+  T++RY+K +    +T    + N   Q  + E  KL+ ++ N+Q + RN+LGE L  L  KEL+ +E +L+  +  IRS + + +  ++  +Q+RE  L  +N+ LR K+ E+ +
Sbjct:   51 RGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQ 179          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.108e-13
Identity = 39/141 (27.66%), Postives = 79/141 (56.03%), Query Frame = -3
Query:  425 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSY 844
            +G+L+EY+N+S ++  ++RY++ +            +   +  E  KL+ ++  +Q + ++ +GE L  L+ KEL+N+E +L+  +  IRS+KN+L+   I  +QK++  L   N  L  K+ E E+  Q ++ +   S +
Sbjct:   51 KGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKEREKSAQQISGINSSSLF 191          
The following BLAST results are available for this feature:
BLAST of CF832249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
MADS6_ORYSJ4.974e-1429.71MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD14_ORYSI4.974e-1427.53MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL8_SOLTU4.974e-1431.58Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL6_ARATH6.497e-1433.33Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AGL17_ARATH6.497e-1427.91Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
MADS1_ORYSJ8.485e-1430.26MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI8.485e-1430.26MADS-box transcription factor 1 OS=Oryza sativa su... [more]
AGL19_ARATH8.485e-1434.17Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MADS8_ORYSJ1.108e-1333.33MADS-box transcription factor 8 OS=Oryza sativa su... [more]
AGL8_SOLLC1.108e-1327.66Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832249 ID=CF832249; Name=CF832249; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTTACTAATCATTAATATCATATTCGAAATTAACATCA
AATGCAGAGACTTTGTGTTTGCATTAGGCATACAGAATATGAATTCATGG
CTGACAAACATATATATAATATTTATGAGTCTTAAAATAGTTTATATAGC
TACTAGCTTAGGCCCCTGATGATCACTTAATTAAGCAAAGTTGATTTCTT
CGCTGCATCTTATAGCAATTTTGAGCGCGCACCTGCACACCTTTTATCTA
GAATGAAGTAATAGCTAGATACCCTCCATAGGATATGACATGGCAGAATA
TTCTTCAAACATATTAAACTAACTGAAGGGCCATCTGATCCTGGCGTGGG
TAATGATTGGTGGGCTGTAATGCATTGACTTGGAAATAGCTCCGGGAATC
AAATGGCTGAGACTGTATAATCTCGTAGCTACTCCCTCCTTGCATCAAAT
TCATGTTCTGCTGTCCTCTTTCATTCTCGGCTATCTTTGCTCGGAGAAGC
TGGTTGCTGTTGTGCAAGTCAACTTCCCTCTTCTGCATGTACTCAATTTC
TGCAAACAGCAGCTCATTCTTTTTAGATCGGATTCTGCTAATACCTTTCT
CTAAACGAGTCTCCATGTTCTTGAGTTCCTTGAAATTTAACCCACTTAGT
GATTCACCCAACATGTTTCTGTTTGAATTTTGCATATTGCTAATTTGTAT
CCTCAGCTTGGCAGCTTCTTGCTGGTAGAACTGAGCATTTGCTTCACAGA
TAGACCCAGTATTTGAGGTATCTGCAGTGGCCTTCTTGTACCTGTCAATT
GTTGATTTCACACTGTTGTTGGAATACTCATAAAGGCGGCCGCGGC
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