CF832249

Overview
NameCF832249
Unique NameCF832249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1009 contig Csv1_Contig1009:391..1237. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.381e-13
Identity = 42/128 (32.81%), Postives = 77/128 (60.16%), Query Frame = -3
Query:  464 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERG 844
            RG+LYE+S++S +  T++RY+K   D  +     + N+Q  + E   L  +I +++ S R M+GE L   + +EL+ +E +L++ + +IR+KK +LL  E E ++++E +L   N++L  K     RG
Sbjct:   51 RGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRND-NSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGRG 177          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.225e-12
Identity = 53/185 (28.65%), Postives = 100/185 (54.05%), Query Frame = -3
Query:  350 RGRLYEY--SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAEN--------------ERGQQNMNLMQGGSSYEIIQSQPFDSRSYF---QVN-ALQPTNHY 844
            RG+LYE+  S + +  T+D+Y+K +  T +     + + Q   Q+  KL+ ++  +Q+S R++LGE LS ++  EL+++E +++  + +IRS K   +  ++  ++ +E  L  +N+ LR K+ ++              E+ QQ+    QG SSY+   + P     +F   Q N ALQ ++HY
Sbjct:   51 RGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAK-DLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQ--SNPPIQEAGFFKPLQGNVALQMSSHY 232          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.090e-12
Identity = 46/166 (27.71%), Postives = 90/166 (54.22%), Query Frame = -3
Query:  368 GRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE------RGQQNMNLMQG-GSSYEIIQSQPFDSRSYFQVNAL 841
            GRLY++S++S +  T++RY++    + +  +      Q   QE   L+  +  +Q S RN+LGE L+ L   EL+ +E+++ + + +IRS+K ++L  E+  ++++E  L ++N++L+ K+ E +      +   N N   G G    +  S+P     +FQ   L
Sbjct:   52 GRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAAPPQPPWNGNCSNGHGGGGGVFSSEPPQPEHFFQALGL 217          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.090e-12
Identity = 38/128 (29.69%), Postives = 77/128 (60.16%), Query Frame = -3
Query:  467 RGRLYEYSNNS-VKSTIDRYKKAT-ADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 844
            +G+L+EYS +S ++  ++RY++ + A+        + N   +  E  +L+ +I  ++ + R+ LGE L  ++ KEL+N+E +L+  +  IR++KN+L++  I  +QK+E  +   N +L  +I E E+
Sbjct:   51 KGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTN-WSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREK 177          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12
Identity = 43/142 (30.28%), Postives = 82/142 (57.75%), Query Frame = -3
Query:  422 RGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYE 844
            RG+LYE+ S++++  T+DRY+K +  +    +      +   +E  KL+ +  N+Q   RN+LGE L  LN KEL+ +E +L+  + ++RS K + +  ++  +Q +E  L  +N+ L  K+ ++  G ++ + M GG  +E
Sbjct:   51 RGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKL-DDMIGVRSHH-MGGGGGWE 190          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12
Identity = 38/128 (29.69%), Postives = 76/128 (59.38%), Query Frame = -3
Query:  467 RGRLYEYSNNS-VKSTIDRYKKAT-ADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 844
            +G+L+EYS +S ++  ++RY++ + A+        + N   +  E  +L+ +I  ++ + R+ LGE L  ++ KEL+N+E +L+  +  IRS+KN+L+   I  +Q++E  +   N +L  +I E E+
Sbjct:   51 KGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTN-WSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREK 177          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.037e-11
Identity = 40/126 (31.75%), Postives = 73/126 (57.94%), Query Frame = -3
Query:  470 GRLYEYSN--NSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 841
            G+L+EYS+  +S+K  I+RY+K +        I E + Q    E  +++ +   +Q + R M+GE L+ L   EL ++  +LE   SR+RS+KN+L+  ++E ++++E  L + N  L   +AE +
Sbjct:   52 GKLFEYSSASSSMKKIIERYQKVSG-----ARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAEQQ 172          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 50/183 (27.32%), Postives = 95/183 (51.91%), Query Frame = -3
Query:  326 RGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNL---MQGGSSYEIIQSQP-FDSRSYFQVNALQPT-----NHYPRQDQMAL 844
            RG+LYE+ S +++  T++RY+K +  +    +      +   +E  KL+ +  N+Q   RN+LGE L  LN KEL+ +E +L+  + ++R  K + +  ++  +Q +E  L ++N+ L  K+ E+  G ++ ++    +GG    I    P   S+  +Q     PT     +H    +QMA+
Sbjct:   51 RGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKL-EDMIGVRHHHIGGGWEGGDQQNIAYGHPQAHSQGLYQSLECDPTLQIGYSHPVCSEQMAV 232          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 42/136 (30.88%), Postives = 79/136 (58.09%), Query Frame = -3
Query:  449 RGRLYEY-SNNSVKSTIDRYKKAT--ADTSNTGSICEANAQFY-QQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMN 844
            RG+LYE+ S++S+  T++RY+K    A   N  S      +   QQE  KL+ +   +Q + RN+LGE L  L+ KEL+++E +L+  + +IR+ + + +  ++  +Q +E  L  +N+ LR ++A+  +    +N
Sbjct:   51 RGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQMPLQLN 186          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 39/145 (26.90%), Postives = 79/145 (54.48%), Query Frame = -3
Query:  449 RGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI-------------AENERGQQNMN 844
            RG+LYE+++ S + TI+RY+  T +     ++ + + +  + +A  L  ++  ++   R +LGE L   + +EL ++E +LE+ +  IR +K +LL  ++  ++++E+ L   N+ LR K              AE+E   +N+N
Sbjct:   51 RGKLYEFASASTQKTIERYRTYTKENIGNKTV-QQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPPLSAPLTVRAEDENPDRNIN 194          
The following BLAST results are available for this feature:
BLAST of CF832249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
AGL14_ARATH9.381e-1332.81Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
AGL3_ARATH1.225e-1228.65Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MAD34_ORYSJ2.090e-1227.71MADS-box transcription factor 34 OS=Oryza sativa s... [more]
AP1_ARATH2.090e-1229.69Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
SEP1_ARATH4.656e-1230.28Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
AP1_SINAL4.656e-1229.69Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
GGM13_GNEGN1.037e-1131.75MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
SEP2_ARATH2.311e-1127.32Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
SEP3_ARATH3.018e-1130.88Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MAD50_ORYSJ3.018e-1126.90MADS-box transcription factor 50 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832249 ID=CF832249; Name=CF832249; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTTACTAATCATTAATATCATATTCGAAATTAACATCA
AATGCAGAGACTTTGTGTTTGCATTAGGCATACAGAATATGAATTCATGG
CTGACAAACATATATATAATATTTATGAGTCTTAAAATAGTTTATATAGC
TACTAGCTTAGGCCCCTGATGATCACTTAATTAAGCAAAGTTGATTTCTT
CGCTGCATCTTATAGCAATTTTGAGCGCGCACCTGCACACCTTTTATCTA
GAATGAAGTAATAGCTAGATACCCTCCATAGGATATGACATGGCAGAATA
TTCTTCAAACATATTAAACTAACTGAAGGGCCATCTGATCCTGGCGTGGG
TAATGATTGGTGGGCTGTAATGCATTGACTTGGAAATAGCTCCGGGAATC
AAATGGCTGAGACTGTATAATCTCGTAGCTACTCCCTCCTTGCATCAAAT
TCATGTTCTGCTGTCCTCTTTCATTCTCGGCTATCTTTGCTCGGAGAAGC
TGGTTGCTGTTGTGCAAGTCAACTTCCCTCTTCTGCATGTACTCAATTTC
TGCAAACAGCAGCTCATTCTTTTTAGATCGGATTCTGCTAATACCTTTCT
CTAAACGAGTCTCCATGTTCTTGAGTTCCTTGAAATTTAACCCACTTAGT
GATTCACCCAACATGTTTCTGTTTGAATTTTGCATATTGCTAATTTGTAT
CCTCAGCTTGGCAGCTTCTTGCTGGTAGAACTGAGCATTTGCTTCACAGA
TAGACCCAGTATTTGAGGTATCTGCAGTGGCCTTCTTGTACCTGTCAATT
GTTGATTTCACACTGTTGTTGGAATACTCATAAAGGCGGCCGCGGC
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