CF832250

Overview
NameCF832250
Unique NameCF832250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: SMP1_YEAST (Transcription factor SMP1 OS=Saccharomyces cerevisiae GN=SMP1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 3 
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKAT 461
            MGR KIEI+ I++  NR VTF KR+ GL KKA+ELSVLC  ++++I+  S    YEYS+  + + ++ ++  T
Sbjct:    1 MGRRKIEIEPIKDDRNRTVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEYSSVDMSNLLNVHQNNT 73
The following BLAST results are available for this feature:
BLAST of CF832250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
SMP1_YEAST1.384e-1145.21Transcription factor SMP1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832250 ID=CF832250; Name=CF832250; organism=Citrus sinensis; type=EST; length=728bp
CCGTTTAACTTTCACTTTCTCTTCTGCTTCTCTCCCTGCTCTCTTCTCAT
TTTTTGTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCT
GCTGAAACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACA
TTCCTTTGGTTAGATAGCAGGTGGTCAAGAAAAGAATGGCGTTTCCAAAT
GAATTAGCAGCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAG
AGGAAAGATCGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGA
CCTTCTGCAAGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCT
GTTCTTTGTGATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCG
CCTTTATGAGTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACA
AGAAGGCCACTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAAT
GCTCAGTTCTACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAA
TATGCAAAATTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAA
ATTTCAAGGAACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGC
AGAATCCGATCTAAAAAGAATGAGCTGCTGTTTGCAGAAATTGAGTACAT
GCAGAAGAGGGAAGTTGACTTGCACAAC
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