CF832250

Overview
NameCF832250
Unique NameCF832250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1009 contig Csv1_Contig1009:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.822e-35
Identity = 74/150 (49.33%), Postives = 110/150 (73.33%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEI 692
            MGRGKI IKRI+NT NRQVTF KRR GL+KKA EL++LCDA+V LIVFS  GRLY++S++S+KS I+RY++A  +     +   + A+F+Q+E   LR Q+ N+ ++NR +LGE +S    ++L+ ++ ++E  +  IR+KK++LL  EI
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNPM-SEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEI 149          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.910e-35
Identity = 75/158 (47.47%), Postives = 109/158 (68.99%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVSLIVFS+RG+LYE+ S +++  T++RY+K +  +    +      +   +E  KL+ +  N+Q   RN+LGE L  LN KEL+ +E +L+  + ++R  K + +  ++  +Q +E
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKE 158          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.520e-34
Identity = 76/158 (48.10%), Postives = 109/158 (68.99%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            MGRG++E+K IEN  NRQVTF KRR  LLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S+ S+  T+++Y+K     S   +I     Q  QQE  KL+ ++  +Q S RN+LGE L  L  KEL+ +E +L+  + +IRS + + +  ++  +Q+RE
Sbjct:    1 MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQKCNFG-SPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRRE 157          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.985e-34
Identity = 73/163 (44.79%), Postives = 114/163 (69.94%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHN 728
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV+LIVFSS+G+L+EYS +S ++  ++RY +             + ++ +  E AKL+ ++  ++ + RN +GE L  L+ KEL+++E +L+  I  IRS+KN+ +F  I  +QK++  L +
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQD 163          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.386e-34
Identity = 71/158 (44.94%), Postives = 112/158 (70.89%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EY+N+S ++  ++RY++ +            +   +  E AKL+ ++  +Q + ++ +GE L  LN KEL+N+E +L+  +  IRS+KN+L+   I  +QK++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQD 158          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.386e-34
Identity = 77/161 (47.83%), Postives = 115/161 (71.43%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDL 722
            M RGK E+KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEV+LI+FS RG+LYE+ S++S+  T++RY+K   D  +     + N+Q  + E   L  +I +++ S R M+GE L   + +EL+ +E +L++ + +IR+KK +LL  E E ++++E +L
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRND-NSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNL 160          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 4.422e-34
Identity = 74/163 (45.40%), Postives = 116/163 (71.17%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKK-ATADTSNTGSICEANAQF-YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDL 722
            MGRG++E+KRIEN  NRQVTF KRR GLLKKA E+SVLCDAEVSLIVFS +G+L+EYS+ S ++  ++RY++ + A+          NAQ  +  E ++L+ +I  ++ + R+ LGE L  ++ K+L+N+E +LE  +  IRS+KN+L+   + ++Q++E ++
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEI 163          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.542e-34
Identity = 77/161 (47.83%), Postives = 113/161 (70.19%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKAT--ADTSNTGSICEANAQF-YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S++S+  T++RY+K    A   N  S      +   QQE  KL+ +   +Q + RN+LGE L  L+ KEL+++E +L+  + +IR+ + + +  ++  +Q +E
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKE 161          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.542e-34
Identity = 70/158 (44.30%), Postives = 111/158 (70.25%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV+L++FSS+G+L+EYS +S ++  ++RY +             + ++ +  E AKL+ ++  ++ + RN +GE L  L+ KEL+++E +L   I  IRS+KN+ +F  I  +QK++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKD 158          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.851e-34
Identity = 73/169 (43.20%), Postives = 114/169 (67.46%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKK--------ATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDL 722
            MGRGK+++KRIENT NRQVTF KRR+GLLKKA E+SVLCDAEV+LI+FS++G+LY+Y+ +S +   ++RY++         +A++   G+ C         E  KL+ ++  +Q   ++++GE L  LN KEL+ +E +LE  +  IRS+K++L+   I  +Q++E  L
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWC--------HEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSL 161          
The following BLAST results are available for this feature:
BLAST of CF832250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
MAD25_ORYSJ6.822e-3549.33MADS-box transcription factor 25 OS=Oryza sativa s... [more]
SEP2_ARATH8.910e-3547.47Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
AGL9_ARADE1.520e-3448.10Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL8_ARATH1.985e-3444.79Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SOLTU3.386e-3444.94Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL14_ARATH3.386e-3447.83Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
CAL_ARATH4.422e-3445.40Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
SEP3_ARATH7.542e-3447.83Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL8_SINAL7.542e-3444.30Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
MAD14_ORYSI9.851e-3443.20MADS-box transcription factor 14 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832250 ID=CF832250; Name=CF832250; organism=Citrus sinensis; type=EST; length=728bp
CCGTTTAACTTTCACTTTCTCTTCTGCTTCTCTCCCTGCTCTCTTCTCAT
TTTTTGTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCT
GCTGAAACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACA
TTCCTTTGGTTAGATAGCAGGTGGTCAAGAAAAGAATGGCGTTTCCAAAT
GAATTAGCAGCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAG
AGGAAAGATCGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGA
CCTTCTGCAAGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCT
GTTCTTTGTGATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCG
CCTTTATGAGTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACA
AGAAGGCCACTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAAT
GCTCAGTTCTACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAA
TATGCAAAATTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAA
ATTTCAAGGAACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGC
AGAATCCGATCTAAAAAGAATGAGCTGCTGTTTGCAGAAATTGAGTACAT
GCAGAAGAGGGAAGTTGACTTGCACAAC
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