CF832250

Overview
NameCF832250
Unique NameCF832250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1009 contig Csv1_Contig1009:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.680e-33
Identity = 73/169 (43.20%), Postives = 113/169 (66.86%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKK--------ATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDL 722
            MGRGK+++KRIEN  NRQVTF KRR+GLLKKA E+SVLCDAEV+LI+FS++G+LYEY+ +S +   ++RY++         +A++   G+ C         E  KL+ ++  +Q   ++++GE L  LN KEL+ +E +LE  +  IRS+K++L+   I  +Q++E  L
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWC--------HEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSL 161          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.866e-33
Identity = 76/164 (46.34%), Postives = 107/164 (65.24%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS----VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDL 722
            MGRGK+++KRIEN  NRQVTF KRRNGLLKKA+E+SVLCDAEV+ IVFS +G+LYEY+ +S    +    +RY  A     +  S  E N   +  E  KL+ +I  +Q  +++++GE L  LN KEL+ +E +LE  +  I S+K+ L+   I  +QK+E  L
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGN---WCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSL 161          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.866e-33
Identity = 69/158 (43.67%), Postives = 111/158 (70.25%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EY+N+S ++  ++RY++ +            +   +  E  KL+ ++  +Q + ++ +GE L  L+ KEL+N+E +L+  +  IRS+KN+L+   I  +QK++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKD 158          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 75/161 (46.58%), Postives = 111/161 (68.94%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKAT---ADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S++S+  T++RY+K      + +       A     QQE  KL+ +   +Q + RN+LGE L  L+ KEL+ +E +L+  + +IR+ + + +  ++  +Q +E
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKE 161          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 73/162 (45.06%), Postives = 114/162 (70.37%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY--SNNSVKSTIDRYKK---ATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            MGRGK+E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAE++L++FS+RG+LYE+  S + +  T+D+Y+K   AT D + +      + Q   Q+  KL+ ++  +Q+S R++LGE LS ++  EL+++E +++  + +IRS K   +  ++  ++ +E
Sbjct:    1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAK----DLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKE 158          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.339e-33
Identity = 70/158 (44.30%), Postives = 109/158 (68.99%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EY+ +S ++  ++RY++ +            +   +  E AKL+ ++  +Q + +  +GE L  LN KEL+N+E +L   +  IRS+KN+L+   I  +QK++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQD 158          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.339e-33
Identity = 70/162 (43.21%), Postives = 117/162 (72.22%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHN 728
            MGRGKI I++I+++T+RQVTF KRR GL+KKA EL++LCDAEV LI+FS+  +LY+++++SVKSTI+R+  A  +     +   +  +F+Q+EA  LR ++ ++Q + R + G  L+GL+ KEL+N+E++LE  +  IR K+ ++L  EI+ + ++   +H+
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSSVKSTIERFNTAKMEEQELMNPA-SEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHH 161          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.426e-32
Identity = 70/159 (44.03%), Postives = 113/159 (71.07%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKK-ATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            MGRG++++KRIEN  NRQVTF KRR GLLKKA+E+SVLCDAEV+L+VFS +G+L+EYS +S ++  ++RY++ + A+        + N   +  E  +L+ +I  ++ + R+ LGE L  ++ KEL+N+E +L+  +  IR++KN+L++  I  +QK+E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTN-WSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKE 158          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.405e-32
Identity = 70/159 (44.03%), Postives = 112/159 (70.44%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKK-ATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            MGRG++++KRIEN  NRQVTF KRR GLLKKA+E+SVLCDAEV+L+VFS +G+L+EYS +S ++  ++RY++ + A+        + N   +  E  +L+ +I  ++ + R+ LGE L  ++ KEL+N+E +L+  +  IRS+KN+L+   I  +Q++E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTN-WSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKE 158          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.059e-32
Identity = 70/160 (43.75%), Postives = 111/160 (69.38%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDL 722
            M RGK ++KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEV+LIVFS RG+LYE+++ S + TI+RY+  T +     ++ + + +  + +A  L  ++  ++   R +LGE L   + +EL ++E +LE+ +  IR +K +LL  ++  ++++E+ L
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTKENIGNKTV-QQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKL 159          
The following BLAST results are available for this feature:
BLAST of CF832250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
MAD14_ORYSJ1.680e-3343.20MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD15_ORYSJ2.866e-3346.34MADS-box transcription factor 15 OS=Oryza sativa s... [more]
AGL8_SOLLC2.866e-3343.67Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL9_SINAL6.385e-3346.58Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL3_ARATH6.385e-3345.06Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
AGL8_SOLCO8.339e-3344.30Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL17_ARATH8.339e-3343.21Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
AP1_ARATH2.426e-3244.03Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AP1_SINAL5.405e-3244.03Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
MAD50_ORYSJ7.059e-3243.75MADS-box transcription factor 50 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832250 ID=CF832250; Name=CF832250; organism=Citrus sinensis; type=EST; length=728bp
CCGTTTAACTTTCACTTTCTCTTCTGCTTCTCTCCCTGCTCTCTTCTCAT
TTTTTGTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCT
GCTGAAACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACA
TTCCTTTGGTTAGATAGCAGGTGGTCAAGAAAAGAATGGCGTTTCCAAAT
GAATTAGCAGCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAG
AGGAAAGATCGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGA
CCTTCTGCAAGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCT
GTTCTTTGTGATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCG
CCTTTATGAGTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACA
AGAAGGCCACTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAAT
GCTCAGTTCTACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAA
TATGCAAAATTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAA
ATTTCAAGGAACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGC
AGAATCCGATCTAAAAAGAATGAGCTGCTGTTTGCAGAAATTGAGTACAT
GCAGAAGAGGGAAGTTGACTTGCACAAC
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